Yeast de novo genes preferentially emerge from divergently transcribed, GC-rich intergenic regions

Ingrid Lafontaine , Alex S Hebert , Gilles Fischer , Guillaume Achaz
bioRxiv 119768

2017
An evolutionary model identifies the main evolutionary biases for the evolution of genome-replication profiles

Gilles Fischer , Marco Cosentino Lagomarsino , Marco Gherardi , Nicolas Agier
eLife 10

2021
A Versatile Protocol to Generate Translocations in Yeast Genomes Using CRISPR/Cas9.

Nicolas Agier , Aubin Fleiss , Stéphane Delmas , Gilles Fischer
Methods of Molecular Biology 2196 181 -198

2
2021
Genome evolution in yeasts

Bernard Dujon , David Sherman , Gilles Fischer , Pascal Durrens
Nature 430 ( 6995) 35 -44

1,869
2004
Highly Contiguous Nanopore Genome Assembly of Chlamydomonas reinhardtii CC-1690.

Samuel O’Donnell , Frederic Chaux , Gilles Fischer
Microbiology Resource Announcements 9 ( 37)

2
2020
A set of genetically diverged Saccharomyces cerevisiae strains with markerless deletions of multiple auxotrophic genes.

Hélène Louvel , Alexandre Gillet-Markowska , Gianni Liti , Gilles Fischer
Yeast 31 ( 3) 91 -101

8
2014
Eucaryotic genome evolution through the spontaneous duplication of large chromosomal segments.

Romain Koszul , Sandrine Caburet , Bernard Dujon , Gilles Fischer
The EMBO Journal 23 ( 1) 234 -243

237
2004
SynChro: A Fast and Easy Tool to Reconstruct and Visualize Synteny Blocks along Eukaryotic Chromosomes

Guénola Drillon , Alessandra Carbone , Gilles Fischer
PLoS ONE 9 ( 3) e92621

76
2014
The evolution of the temporal program of genome replication.

Nicolas Agier , Stéphane Delmas , Qing Zhang , Aubin Fleiss
Nature Communications 9 ( 1) 2199 -2199

9
2018
Population Genomics Reveals Chromosome-Scale Heterogeneous Evolution in a Protoploid Yeast

Anne Friedrich , Paul Jung , Cyrielle Reisser , Gilles Fischer
Molecular Biology and Evolution 32 ( 1) 184 -192

47
2015
The unstable region of Streptomyces ambofaciens includes 210 kb terminal inverted repeats flanking the extremities of the linear chromosomal DNA.

Pierre Leblond , Gilles Fischer , François‐Xavier Francou , Franca Berger
Molecular Microbiology 19 ( 2) 261 -271

90
1996
Unraveling the genomic diversity of small eukaryotes.

Gilles Fischer , Dawn Thompson , Jennifer Wortman , Cécile Fairhead
Genome Biology 10 ( 12) 318 -318

1
2009
Reshuffling yeast chromosomes with CRISPR/Cas9.

Aubin Fleiss , Samuel O'Donnell , Téo Fournier , Wenqing Lu
PLOS Genetics 15 ( 8)

40
2019
Total Synthesis of a Functional Designer Eukaryotic Chromosome

Narayana Annaluru , Héloïse Muller , Leslie A Mitchell , Sivaprakash Ramalingam
Science 344 ( 6179) 55 -58

583
2014
Dissection of quantitative traits by bulk segregant mapping in a protoploid yeast species.

Anastasie Sigwalt , Claudia Caradec , Christian Brion , Jing Hou
Fems Yeast Research 16 ( 5)

10
2016
Characterizing meiotic chromosomes' structure and pairing using a designer sequence optimized for Hi‐C

Héloïse Muller , Vittore F Scolari , Nicolas Agier , Aurèle Piazza
Molecular Systems Biology 14 ( 7)

38
2018
Ulysses: accurate detection of low-frequency structural variations in large insert-size sequencing libraries.

Alexandre Gillet-Markowska , Hugues Richard , Gilles Fischer , Ingrid Lafontaine
Bioinformatics 31 ( 6) 801 -808

15
2015
Filling annotation gaps in yeast genomes using genome-wide contact maps.

Hervé Marie-Nelly , Martial Marbouty , Axel Cournac , Gianni Liti
Bioinformatics 30 ( 15) 2105 -2113

31
2014
MUM&Co: accurate detection of all SV types through whole-genome alignment.

Samuel O’Donnell , Gilles Fischer
Bioinformatics 36 ( 10) 3242 -3243

5
2020