System, Method and Software for Predicting Clinical Outcome of a Drug Treatment of Breast Cancer in a Patient
Denis Shepelin , Anton Buzdin , Ksenia Lezhnina , Alexander Zhavoronkov
2016
System, Method and Software for Predicting Drug Efficacy in a Patient
Denis Shepelin , Anton Buzdin , Ksenia Lezhnina , Alexander Zhavoronkov
2
2016
Combinatorial high-throughput experimental and bioinformatic approach identifies molecular pathways linked with the sensitivity to anticancer target drugs
Larisa Venkova , Alexander Aliper , Maria Suntsova , Roman Kholodenko
Oncotarget 6 ( 29) 27227 -27238
19
2015
Molecular pathway activation features linked with transition from normal skin to primary and metastatic melanomas in human.
Denis Shepelin , Mikhail Korzinkin , Anna Vanyushina , Alexander Aliper
Oncotarget 7 ( 1) 656 -670
23
2016
Selecting the Best: Evolutionary Engineering of Chemical Production in Microbes.
Denis Shepelin , Anne Hansen , Rebecca Lennen , Hao Luo
Genes 9 ( 5) 249
17
2018
Benchmarking kinetic models of Escherichia coli metabolism
Denis Shepelin , Daniel Machado , Lars K. Nielsen , Markus J. Herrgård
bioRxiv
2020
Large-scale profiling of signalling pathways reveals an asthma specific signature in bronchial smooth muscle cells
Elena Alexandrova , Giovanni Nassa , Giacomo Corleone , Anton Buzdin
Oncotarget 7 ( 18) 25150 -25161
18
2016
Escherichia coli promoters with consistent expression throughout the murine gut
Jeremy Armetta , Michael Schantz-Klausen , Denis Shepelin , Ruben Vazquez-Uribe
ACS Synthetic Biology 10 ( 12) 3359 -3368
5
2021
GENA-LM: A Family of Open-Source Foundational Models for Long DNA Sequences
Veniamin Fishman , Yuri Kuratov , Maxim Petrov , Aleksei Shmelev
bioRxiv 2023.06. 12.544594 -2023.06. 12.544594
19
2023
GENA-LM: A Family of Open-Source Foundational DNA Language Models for Long Sequences
Veniamin Fishman , Yuri Kuratov , Maxim Petrov , Aleksei Shmelev
bioRxiv 2023.06. 12.544594 -2023.06. 12.544594
19
2023
Gena-lm: A family of open-source foundational models for long dna sequences. bioRxiv
Veniamin Fishman , Yuri Kuratov , Maxim Petrov , Aleksei Shmelev
2023 -06
10
2023
On the question of activity of oxidative branch of pentose phosphate shunt in pgl mutant of Escherichia coli
ES Kovaleva , DD Shepelin , MA Baboshin , LI Golubeva
Bioinformatics of Genome Regulation and Structure/Systems Biology (BGRS/SB-2022) 551 -551
1
2022