Hyper-molecules: high dimensional maps of molecular conformations

Roy Lederman
Acta Crystallographica Section A 76

2020
Dynamical sampling with random noise

Akram Aldroubi , Longxiu Huang , Ilya Krishtal , Roy Lederman
international conference on sampling theory and applications 409 -412

4
2017
A random-permutations-based approach to fast read alignment

Roy Lederman
BMC Bioinformatics 14 ( 5) 1 -10

4
2013
Continuous heterogeneity analysis of CryoEM images through Zernike polynomials and spherical harmonics

David Herreros Calero , Roy Lederman , James Krieger , David Myška
Microscopy and Microanalysis 27 ( S1) 1680 -1682

2
2021
On the Analytical and Numerical Properties of the Truncated Laplace Transform

Roy Lederman
http://cpsc.yale.edu/sites/default/files/files/tr1490.pdf

22
2014
Integrating molecular models into CryoEM heterogeneity analysis using scalable high-resolution deep Gaussian mixture models

Muyuan Chen , Bogdan Toader , Roy Lederman
Journal of Molecular Biology 168014 -168014

12
2023
Homopolymer Length Filters

Roy Lederman
Technical report, YALEU/DCS/TR1465

6
2012
Abstract 2100 UNCOVERING THE PROTEIN STRUCTURAL ENSEMBLE BY INTEGRATING MOLECULAR MODELING, ARTIFICIAL INTELLIGENCE, AND CRYO-EM

Erik Thiede , Wai Shing Tang , David Silva , Jake Moomaw
Journal of Biological Chemistry 300 ( 3)

2024
Uncovering the protein structural ensemble by integrating molecular modeling with cryo-EM

David Silva-Sánchez , Jake Moomaw , Wai Shing Tang , Sonya M Hanson
Biophysical Journal 123 ( 3) 183a -184a

2024
On the Analytical and Numerical Properties of the Truncated Laplace Transform I.

R. R. Lederman , V. Rokhlin
SIAM Journal on Numerical Analysis 53 ( 2) 1214 -1235

12
2015
On the Analytical and Numerical Properties of the Truncated Laplace Transform. Part II

R. R. Lederman , V. Rokhlin
SIAM Journal on Numerical Analysis 54 ( 2) 665 -687

2016
NON-UNIQUE GAMES OVER COMPACT GROUPS AND ORIENTATION ESTIMATION IN CRYO-EM

Afonso S Bandeira , Yutong Chen , Roy R Lederman , Amit Singer
Inverse Problems 36 ( 6) 064002

13
2020
Approximating deformation fields for the analysis of continuous heterogeneity of biological macromolecules by 3D Zernike polynomials

David Herreros , Roy R Lederman , James Krieger , Amaya Jiménez-Moreno
IUCrJ 8 ( 6) 992 -1005

7
2021
Estimating conformational landscapes from Cryo-EM particles by 3D Zernike polynomials

David Herreros , Roy R Lederman , James M Krieger , Amaya Jiménez-Moreno
Nature Communications 14 ( 1) 154 -154

25
2023
Adaptation of the Independent Metropolis-Hastings Sampler with Normalizing Flow Proposals

James A Brofos , Marylou Gabrié , Marcus A Brubaker , Roy R Lederman
International Conference on Artificial Intelligence and Statistics (AISTATS)

7
2022
Manifold Density Estimation via Generalized Dequantization

James A Brofos , Marcus A Brubaker , Roy R Lederman
ICML Workshop on Invertible Neural Networks, Normalizing Flows, and Explicit Likelihood Models (INNF+)

5
2021