Evaluating the performance of likelihood methods for detecting population structure and migration

ZAID Abdo , Keith A. Crandall , PAUL Joyce
Molecular Ecology 13 ( 4) 837 -851

73
2004
Age-ordered distributions for population genetics models

Paul Joseph Joyce
Department of Mathematics, University of Utah

1988
Likelihoods and simulation methods for a class of nonneutral population genetics models.

Magnus Nordborg , Paul Joyce , Peter Donnelly
Genetics 159 ( 2) 853 -867

30
2001
Parameter Estimation and Hypothesis Testing in Experimental Evolution Using R

Larry J. Forney , Leen De Gelder , Jose M. Ponciano , Eva Top

2004
Assessing allelic dropout and genotype reliability using maximum likelihood.

Lisette P Waits , Paul Joyce , Craig R Miller
Genetics 160 ( 1) 357 -366

296
2002
Plasmid stability of the broad host range plasmid pB10 differs among closely related Proteobacteria

Leen De Gelder , José Ponciano , Eva Top , Zaid Abdo
8th Symposium on Bacterial Genetics and Ecology (BAGECO-8)

2005
Adaptive evolution of a broad-host-range plasmid results in improved stability in initially unfavorable hosts

Leen De Gelder , José Ponciano , Eva Top , Paul Joyce
11th International symposium on Microbial Ecology (ISME-11)

2006
Maximum likelihood estimates under k-allele models with selection can be numerically unstable

Paul Joyce , Erkan Ozge Buzbas
The Annals of Applied Statistics 3 ( 3) 1147 -1162

6
2009
Performance-Based Selection of Likelihood Models for Phylogeny Estimation

Vladimir Minin , Zaid Abdo , Paul Joyce , Jack Sullivan
Systematic Biology 52 ( 5) 674 -683

374
2003
Estimating the number of one-step beneficial mutations.

Andrzej J. Wojtowicz , Craig R. Miller , Paul Joyce
Statistical Applications in Genetics and Molecular Biology 11 ( 4) 1 -28

2012
Weak Convergence of Population Genealogical Processes to the Coalescent with Ages

Peter Donnelly , Paul Joyce
Annals of Probability 20 ( 1) 322 -341

5
1992
Bayesian analysis of amino acid substitution models

John P Huelsenbeck , Paul Joyce , Clemens Lakner , Fredrik Ronquist
Philosophical Transactions of the Royal Society B 363 ( 1512) 3941 -3953

42
2008
The evolution of antibiotic susceptibility and resistance during the formation of Escherichia coli biofilms in the absence of antibiotics.

Jabus G Tyerman , José M Ponciano , Paul Joyce , Larry J Forney
BMC Evolutionary Biology 13 ( 1) 22 -22

23
2013
Love the one you’re with: replicate viral adaptations converge on the same phenotypic change

Craig R. Miller , Anna C. Nagel , LuAnn Scott , Matt Settles
PeerJ 4 2227

6
2016
Differences in the composition of vaginal microbial communities found in healthy Caucasian and black women

Xia Zhou , Celeste J Brown , Zaid Abdo , Catherine C Davis
The ISME Journal 1 ( 2) 121 -133

622
2007
A General Extreme Value Theory Model for the Adaptation of DNA Sequences Under Strong Selection and Weak Mutation

Paul Joyce , Darin R. Rokyta , Craig J. Beisel , H. Allen Orr
Genetics 180 ( 3) 1627 -1643

71
2008
Mutational effects and population dynamics during viral adaptation challenge current models.

Craig R. Miller , Paul Joyce , Holly A. Wichman
Genetics 187 ( 1) 185 -202

77
2011
17
2012
The Population Biology of Bacterial Plasmids: A Hidden Markov Model Approach

José M. Ponciano , Leen De Gelder , Eva M. Top , Paul Joyce
Genetics 176 ( 2) 957 -968

54
2007
High Frequency of Mutations That Expand the Host Range of an RNA Virus

Martin T. Ferris , Paul Joyce , Christina L. Burch
Genetics 176 ( 2) 1013 -1022

78
2007