An automated procedure for the extraction of metabolic network information from time series data.

SIMEONE MARINO , EBERHARD O. VOIT
Journal of Bioinformatics and Computational Biology 4 ( 3) 665 -691

47
2006
Challenges for the identification of biological systems from in vivo time series data.

Eberhard O. Voit , Raman Lall , Simeone Marino
in Silico Biology 5 ( 2) 83 -92

31
2005
Data-parallel algorithms for agent-based model simulation of tuberculosis on graphics processing units

Denise Kirschner , Roshan M. D'Souza , Simeone Marino , Mikola Lysenko
spring simulation multiconference 21

38
2009
A review of computational and mathematical modeling contributions to our understanding of Mycobacterium tuberculosis within-host infection and treatment

Denise Kirschner , Elsje Pienaar , Simeone Marino , Jennifer J. Linderman
Current Opinion in Systems Biology 3 170 -185

26
2017
Mathematical and computational approaches in understanding the immunobiology of granulomatous diseases

Gesham Magombedze , Simeone Marino
Current Opinion in Systems Biology 12 1 -11

4
2018
An anthropologically based model of the impact of asymptomatic cases on the spread of Neisseria gonorrhoeae

Ashley Hazel , Simeone Marino , Carl Simon
Journal of the Royal Society Interface 12 ( 106) 20150067

6
2015
Dynamic balance of pro- and anti-inflammatory signals controls disease and limits pathology.

Joseph M. Cicchese , Stephanie Evans , Caitlin Hult , Louis R. Joslyn
Immunological Reviews 285 ( 1) 147 -167

151
2018
The Role of Dimensionality in Understanding Granuloma Formation.

Simeone Marino , Caitlin Hult , Paul Wolberg , Jennifer Linderman
Computation (Basel, Switzerland) 6 ( 4) 58

7
2018
A Multi-Compartment Hybrid Computational Model Predicts Key Roles for Dendritic Cells in Tuberculosis Infection

Simeone Marino , Denise Kirschner
Computation (Basel, Switzerland) 4 ( 4) 39

21
2016
Mycobacterium tuberculosis as viewed through a computer

Denise Kirschner , Simeone Marino
Trends in Microbiology 13 ( 5) 206 -211

27
2005
Variability in tuberculosis granuloma T cell responses exists, but a balance of pro- and anti-inflammatory cytokines is associated with sterilization.

Hannah Priyadarshini Gideon , JiaYao Phuah , Amy J. Myers , Bryan D. Bryson
PLOS Pathogens 11 ( 1) 1 -28

177
2015
Predictive Big Data Analytics using the UK Biobank Data.

Yiwang Zhou , Lu Zhao , Nina Zhou , Yi Zhao
Scientific Reports 9 ( 1) 6012

9
2019
Different limit to the body's ability of increasing fat-free mass

Geltrude Mingrone , Simeone Marino , Andrea DeGaetano , Esmeralda Capristo
Metabolism-clinical and Experimental 50 ( 9) 1004 -1007

23
2001
A Systems Biology Approach for Understanding Granuloma Formation and Function in Tuberculosis

Mohammad Fallahi-Sichani , Simeone Marino , JoAnne L. Flynn , Jennifer J. Linderman
Systems Biology of Tuberculosis 127 -155

9
2013
A multifaceted approach to modeling the immune response in tuberculosis

Simeone Marino , Jennifer J. Linderman , Denise E. Kirschner
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 3 ( 4) 479 -489

48
2011
Compressive Big Data Analytics: An ensemble meta-algorithm for high-dimensional multisource datasets.

Simeone Marino , Yi Zhao , Nina Zhou , Yiwang Zhou
PLOS ONE 15 ( 8)

2020
Mathematical Models of Anti-TNF Therapies and their Correlation with Tuberculosis

Simeone Marino , Mohammad Fallahi-Sichani , Jennifer J. Linderman , Denise E. Kirschner
Antibody-Mediated Drug Delivery Systems 83 -104

3
2012
Microenvironments in tuberculous granulomas are delineated by distinct populations of macrophage subsets and expression of nitric oxide synthase and arginase isoforms

Joshua T. Mattila , Olabisi O. Ojo , Diane Kepka-Lenhart , Simeone Marino
Journal of Immunology 191 ( 2) 773 -784

209
2013
Inoculation Dose of Mycobacterium tuberculosis Does Not Influence Priming of T Cell Responses in Lymph Nodes

Amy J. Myers , Simeone Marino , Denise E. Kirschner , JoAnne L. Flynn
Journal of Immunology 190 ( 9) 4707 -4716

14
2013