Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay
P. Kheradpour , J. Ernst , A. Melnikov , P. Rogov
Genome Research 23 ( 5) 800 -811
211
2013
SARS-CoV-2 On-the-Spot Virus Detection Directly From Patients
Nadav Ben-Assa , Rawi Naddaf , Tal Gefen , Tal Capucha
medRxiv
22
2020
Direct on-the-spot detection of SARS-CoV-2 in patients.
Nadav Ben-Assa , Rawi Naddaf , Tal Gefen , Tal Capucha
Experimental Biology and Medicine 245 ( 14) 1187 -1193
9
2020
Genome-scale high-resolution mapping of activating and repressive nucleotides in regulatory regions
Jason Ernst , Alexandre Melnikov , Xiaolan Zhang , Li Wang
Nature Biotechnology 34 ( 11) 1180 -1190
85
2016
Longitudinal genomic surveillance of Plasmodium falciparum malaria parasites reveals complex genomic architecture of emerging artemisinin resistance
Gustavo C. Cerqueira , Ian H. Cheeseman , Steve F. Schaffner , Shalini Nair
Genome Biology 18 ( 1) 78 -78
72
2017
Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts
Joshua Z Levin , Michael F Berger , Xian Adiconis , Peter Rogov
Genome Biology 10 ( 10) 1 -8
212
2009
Hybrid selection for sequencing pathogen genomes from clinical samples
Alexandre Melnikov , Kevin Galinsky , Peter Rogov , Timothy Fennell
Genome Biology 12 ( 8) 1 -9
86
2011
Solution Hybrid Selection with Ultra-long Oligonucleotides for Massively Parallel Targeted Sequencing
Andreas Gnirke , Alexandre Melnikov , Jared Maguire , Peter Rogov
Nature Biotechnology 27 ( 2) 182 -189
1,634
2009
Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay
Alexandre Melnikov , Anand Murugan , Xiaolan Zhang , Tiberiu Tesileanu
Nature Biotechnology 30 ( 3) 271 -277
476
2012
Comprehensive mutational scanning of a kinase in vivo reveals substrate-dependent fitness landscapes
Alexandre Melnikov , Peter Rogov , Li Wang , Andreas Gnirke
Nucleic Acids Research 42 ( 14)
109
2014
Massively parallel reporter assays in cultured mammalian cells.
Alexandre Melnikov , Xiaolan Zhang , Peter Rogov , Li Wang
Journal of Visualized Experiments ( 90) 51719
30
2014
Systematic dissection of genomic features determining transcription factor binding and enhancer function
Sharon R. Grossman , Xiaolan Zhang , Li Wang , Jesse Engreitz
Proceedings of the National Academy of Sciences of the United States of America 114 ( 7) 201621150
93
2017
Spatially distinct physiology of Bacteroides fragilis within the proximal colon of gnotobiotic mice.
Gregory P. Donaldson , Wen-Chi Chou , Abigail L. Manson , Peter Rogov
Nature microbiology 5 ( 5) 746 -756
11
2020
High-throughput Screening and CRISPR-Cas9 Modeling of Causal Lipid-associated Expression Quantitative Trait Locus Variants
Avanthi Raghavan , Xiao Wang , Peter Rogov , Li Wang
bioRxiv 056820
5
2016
Targeted Exon Sequencing by In‐Solution Hybrid Selection
Brendan Blumenstiel , Kristian Cibulskis , Sheila Fisher , Matthew DeFelice
Current protocols in human genetics 66 ( 1)
74
2010
Systematic Functional Dissection of Common Genetic Variation Affecting Red Blood Cell Traits
Jacob C. Ulirsch , Satish K. Nandakumar , Li Wang , Felix C. Giani
Cell 165 ( 6) 1530 -1545
286
2016
Large, Diverse Population Cohorts of hiPSCs and Derived Hepatocyte-like Cells Reveal Functional Genetic Variation at Blood Lipid-Associated Loci
Evanthia E. Pashos , YoSon Park , Xiao Wang , Avanthi Raghavan
Cell Stem Cell 20 ( 4) 558 -570.e10
93
2017
Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax
Daniel N Hupalo , Zunping Luo , Alexandre Melnikov , Patrick L Sutton
Nature Genetics 48 ( 8) 953 -958
157
2016
Functional characterization of a Cis-eQTL locus for plasma cholesterol using CRISPR/Cas genome editing in human pluripotent stem cells
Avanthi Raghavan , Derek Peters , Nicolas Kuperwasser , Alexandre Melnikov
Arteriosclerosis, Thrombosis, and Vascular Biology 34 ( Suppl_1) A242 -A242
2
2014
Hybrid selection using genome-wide baits for selective genome enrichment in mixed samples
Andreas Gnirke , Peter Rogov , Daniel Neafsey , Chad Nusbaum
10
2013