A multi-step classifier addressing cohort heterogeneity improves performance of prognostic biomarkers in three cancer types

Ellis Patrick , Sarah-Jane Schramm , John T. Ormerod , Richard A. Scolyer
Oncotarget 8 ( 2) 2807 -2815

1
2017
A cortical immune network map identifies a subset of human microglia involved in Tau pathology

Ellis Patrick , Marta Olah , Mariko Taga , Hans-Ulrich Klein
bioRxiv 234351

11
2017
KinasePA: Phosphoproteomics data annotation using hypothesis driven kinase perturbation analysis

Pengyi Yang , Ellis Patrick , Sean J. Humphrey , Shila Ghazanfar
Proteomics 16 ( 13) 1868 -1871

12
2016
Inferring data-specific micro-RNA function through the joint ranking of micro-RNA and pathways from matched micro-RNA and gene expression data

Ellis Patrick , Michael Buckley , Samuel Müller , David M Lin
Bioinformatics 31 ( 17) 2822 -2828

4
2015
Mass Cytometry Imaging for the Study of Human Diseases-Applications and Data Analysis Strategies.

Heeva Baharlou , Nicolas P. Canete , Anthony L. Cunningham , Andrew N. Harman
Frontiers in Immunology 10 2657

114
2019
Direction pathway analysis of large-scale proteomics data reveals novel features of the insulin action pathway

Pengyi Yang , Ellis Patrick , Shi-Xiong Tan , Daniel J. Fazakerley
Bioinformatics 30 ( 6) 808 -814

19
2014
2020
Transcriptional network dynamics during the progression of pluripotency revealed by integrative statistical learning.

Hani Jieun Kim , Pierre Osteil , Sean J Humphrey , Senthilkumar Cinghu
Nucleic Acids Research 48 ( 4) 1828 -1842

3
2020
PGRMC1 phosphorylation status and cell plasticity 1: glucose metabolism, mitochondria, and mouse xenograft tumorigenesis

Bashar M. Thejer , Partho P. Adhikary , Amandeep Kaur , Sarah L. Teakel
bioRxiv 737718

2
2019
Improved moderation for gene-wise variance estimation in RNA-Seq via the exploitation of external information

Ellis Patrick , Michael Buckley , David Lin , Yee Yang
BMC Genomics 14 ( 1) 1 -9

4
2013
Identification of HIV transmitting CD11c+ human epidermal dendritic cells.

Kirstie M Bertram , Rachel A Botting , Heeva Baharlou , Jake W Rhodes
Nature Communications 10 ( 1) 2759 -2759

25
2019
Estimation of data-specific constitutive exons with RNA-Seq data

Ellis Patrick , Michael Buckley , Yee Yang
BMC Bioinformatics 14 ( 1) 31 -31

5
2013
Deconvolving the contributions of cell-type heterogeneity on cortical gene expression

Ellis Patrick , Mariko Taga , Ayla Ergun , Bernard Ng
PLOS Computational Biology 16 ( 8)

10
2020
Brief Normothermic Machine Perfusion Rejuvenates Discarded Human Kidneys.

Ahmer M. Hameed , David B. Lu , Ellis Patrick , Bo Xu
Transplantation direct 5 ( 11)

9
2019
Digital removal of autofluorescence from microscopy images

Heeva Baharlou , Nicolas P Canete , Kirstie M Bertram , Kerrie J Sandgren
bioRxiv 566315

2
2019
DCARS: differential correlation across ranked samples.

Shila Ghazanfar , Dario Strbenac , John T Ormerod , Jean YH Yang
Bioinformatics 35 ( 5) 823 -829

5
2019
Blood CRP levels are elevated in children and adolescents with functional neurological symptom disorder.

Kasia Kozlowska , Jason Chung , Bronya Cruickshank , Loyola McLean
European Child & Adolescent Psychiatry 28 ( 4) 491 -504

5
2019
PGRMC1 phosphorylation affects cell shape, motility, glycolysis, mitochondrial form and function, and tumor growth

Bashar M. Thejer , Partho P. Adhikary , Amandeep Kaur , Sarah L. Teakel
BMC Molecular and Cell Biology 21 ( 1) 1 -24

12
2020
MicroRNA and mRNA expression profiling in metastatic melanoma reveal associations with BRAF mutation and patient prognosis.

Varsha Tembe , Sarah-Jane Schramm , Mitchell S. Stark , Ellis Patrick
Pigment Cell & Melanoma Research 28 ( 3) 254 -266

45
2015