Metagenomic profiling pipelines improve taxonomic classification for 16S amplicon sequencing data

Tyler Faits , Aubrey R Odom-Mabey , Eduardo Castro-Nallar , Keith A Crandall
bioRxiv 2022 -07

1
2022
7
2022
Levels of persistent organic pollutants (POPs) in the Antarctic atmosphere over time (1980 to 2021) and estimation of their atmospheric half-lives

Thais Luarte , Victoria A Gómez-Aburto , Ignacio Poblete-Castro , Eduardo Castro-Nallar
Atmospheric Chemistry and Physics 23 ( 14) 8103 -8118

7
2023
Occurrence and diffusive air-seawater exchanges of organochlorine pesticides (OCPs) and polychlorinated biphenyls (PCBs) in Fildes Bay, King George Island, Antarctica

Thais Luarte , Andrea Hirmas-Olivares , Juan Höfer , Ricardo Giesecke
Science of the Total Environment 908 168323 -168323

3
2024
Metagenomic profiling pipelines improve taxonomic classification for 16S amplicon sequencing data

Aubrey R Odom , Tyler Faits , Eduardo Castro-Nallar , Keith A Crandall
Scientific reports 13 ( 1) 13957 -13957

19
2023
Comparative analysis of metagenomics and metataxonomics for the characterization of vermicompost microbiomes

Marcos Pérez-Losada , Dhatri Badri Narayanan , Allison R Kolbe , Ignacio Ramos-Tapia
Frontiers in microbiology 13 854423 -854423

9
2022
Pediatric urinary tract infections caused by poultry-associated Escherichia coli

Maliha Aziz , Gregg S Davis , Daniel E Park , Azza H Idris
Microbiology Spectrum e03415 -23

2024
Microbial sequence typing in the genomic era

Marcos Pérez-Losada , Miguel Arenas , Eduardo Castro-Nallar
Infection, Genetics and Evolution 63 346 -359

67
2018
Mutation and recombination in pathogen evolution: Relevance, methods and controversies

Miguel Arenas , Natalia M Araujo , Catarina Branco , Nadine Castelhano
Infection, Genetics and Evolution 63 295 -306

39
2018
Nasal bacteriomes of patients with asthma and allergic rhinitis show unique composition, structure, function and interactions

Marcos Pérez-Losada , Eduardo Castro-Nallar , José Laerte Boechat , Luis Delgado
Microorganisms 11 ( 3) 683 -683

6
2023
The oral bacteriomes of patients with allergic rhinitis and asthma differ from that of healthy controls

Marcos Pérez-Losada , Eduardo Castro-Nallar , José Laerte Boechat , Luís Delgado
Frontiers in Microbiology 14 1197135 -1197135

3
2023
Characterization of the upper respiratory tract microbiota in Chilean asthmatic children reveals compositional, functional, and structural differences

Ignacio Ramos-Tapia , Katiuska L Reynaldos-Grandón , Marcos Pérez-Losada , Eduardo Castro-Nallar
Frontiers in Allergy 4

1
2023
Multilocus sequence typing of pathogens

Marcos Pérez-Losada , Megan L Porter , Raphael P Viscidi , Keith A Crandall

30
2017
Predicting climate change-related genetic offset for the endangered southern South American conifer Araucaria araucana

Antonio Varas-Myrik , Francisco Sepúlveda-Espinoza , Alex Fajardo , Diego Alarcón
Forest Ecology and Management 504 119856 -119856

25
2022
22
2021
Influence of Physical-Chemical Soil Parameters on Microbiota Composition and Diversity in a Deep Hyperarid Core of the Atacama Desert

Bárbara Fuentes , Alessandra Choque , Francisco Gómez , Jaime Alarcón
Frontiers in Microbiology 12

16
2022
Genetic characterization of Salmonella infantis with multiple drug resistance profiles isolated from a poultry-farm in Chile

Coral Pardo-Esté , Diego Lorca , Juan Castro-Severyn , Gabriel Krüger
Microorganisms 9 ( 11) 2370 -2370

14
2021
Long-term interactions of Salmonella Enteritidis with a lytic phage for 21 days in high nutrients media

Rocio Barron-Montenegro , Dácil Rivera , María Jesus Serrano , Rodrigo García
Frontiers in cellular and infection microbiology 12 897171 -897171

6
2022
Role of Microbes in the degradation of organic semivolatile compounds in polar ecosystems: A review

Claudia Egas , Cristóbal Galbán-Malagón , Eduardo Castro-Nallar , Marco A Molina-Montenegro
Science of The Total Environment 879 163046 -163046

2
2023
Exploring the Influence of Small-Scale Geographical and Seasonal Variations Over the Microbial Diversity in a Poly-extreme Athalosaline Wetland

Coral Pardo-Esté , Sergio Guajardo Leiva , Francisco Remonsellez , Eduardo Castro-Nallar
Current Microbiology 80 ( 9) 297 -297

1
2023