James Fleming
机构: Postdoctoral Researcher, JAMSTEC, Yokosuka, Japan
每年引用次数
引用次数
引用: 663
H-指数: 10
I10-指数 : 10
出版物: 20
A Novel Approach to Investigate the Effect of Tree Reconstruction Artifacts in Single-Gene Analysis Clarifies Opsin Evolution in Nonbilaterian Metazoans.
James F Fleming , Roberto Feuda , Nicholas W Roberts , Davide Pisani
Genome Biology and Evolution 12 ( 2) 3906 -3916
14
2020
Pancrustacean Evolution Illuminated by Taxon-Rich Genomic-Scale Data Sets with an Expanded Remipede Sampling
Jesus Lozano-Fernandez , Mattia Giacomelli , James F Fleming , Albert Chen
Genome Biology and Evolution 11 ( 8) 2055 -2070
27
2019
Hagfish genome illuminates vertebrate whole genome duplications and their evolutionary consequences
Daqi Yu , Yandong Ren , Masahiro Uesaka , Alan JS Beavan
BioRxiv 2023.04. 08.536076 -2023.04. 08.536076
11
2023
Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences
Daqi Yu , Yandong Ren , Masahiro Uesaka , Alan JS Beavan
Nature Ecology & Evolution 1 -17
5
2024
The Ediacaran origin of Ecdysozoa: integrating fossil and phylogenomic data
Richard J Howard , Mattia Giacomelli , Jesus Lozano-Fernandez , Gregory D Edgecombe
Journal of the Geological Society 179 ( 4) jgs2021 -107
29
2022
Eye-transcriptome and genome-wide sequencing for Scolecophidia: implications for inferring the visual system of the ancestral snake
David J Gower , James F Fleming , Davide Pisani , Freek J Vonk
Genome biology and evolution 13 ( 12) evab253 -evab253
8
2021
New Tardigrade opsins and differential expression analyses show ontogenic variation in light perception
James F Fleming , Davide Pisani , Kazuharu Arakawa
Genome biology and evolution 13 ( 8) evab164 -evab164
3
2021
The Evolution of Temperature and Desiccation-Related Protein Families in Tardigrada Reveals a Complex Acquisition of Extremotolerance
James F Fleming , Davide Pisani , Kazuharu Arakawa
Genome Biology and Evolution 16 ( 1) evad217 -evad217
2
2024
Identifying and addressing methodological incongruence in phylogenomics: A review
James F Fleming , Alberto Valero‐Gracia , Torsten H Struck
Evolutionary Applications 16 ( 6) 1087 -1104
6
2023
nRCFV: a new, dataset-size-independent metric to quantify compositional heterogeneity in nucleotide and amino acid datasets
James F Fleming , Torsten H Struck
BMC bioinformatics 24 ( 1) 145 -145
5
2023
Comprehensive transcriptome sequencing of Tanaidacea with proteomic evidences for their silk
Keiichi Kakui , James F Fleming , Masaru Mori , Yoshihiro Fujiwara
Genome biology and evolution 13 ( 12) evab281 -evab281
15
2021
The wealth of shared resources: improving molecular taxonomy using eDNA and public databases
James F Fleming
Zoologica Scripta 52 ( 3) 226 -234
5
2023
Systematics of tardigrada: A reanalysis of tardigrade taxonomy with specific reference to Guil et al. (2019)
Kazuharu Arakawa , James F. Fleming , James F. Fleming
Zoologica Scripta 50 ( 3) 376 -382
2021
Molecular palaeontology illuminates the evolution of ecdysozoan vision.
James F. Fleming , Reinhardt Møbjerg Kristensen , Martin Vinther Sørensen , Tae-Yoon S. Park
Proceedings of The Royal Society B: Biological Sciences 285 ( 1892) 20182180
8
2018
Uncertain-tree: discriminating among competing approaches to the phylogenetic analysis of phenotype data.
Mark N. Puttick , Joseph E. O'Reilly , Alastair R. Tanner , James F. Fleming
Proceedings of The Royal Society B: Biological Sciences 284 ( 1846) 20162290
121
2017
Parsimony and maximum-likelihood phylogenetic analyses of morphology do not generally integrate uncertainty in inferring evolutionary history: a response to Brown et al
Mark N. Puttick , Joseph E. O'Reilly , Derek Oakley , Alistair R. Tanner
Proceedings of The Royal Society B: Biological Sciences 284 ( 1864) 20171636
12
2017
Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data
Joseph E. O'Reilly , Mark N. Puttick , Luke Parry , Alastair R. Tanner
Biology Letters 12 ( 4) 20160081
123
2016
Scoutknife: A naïve, whole genome informed phylogenetic robusticity metric
James Fleming , Pia Merete Eriksen , Torsten Hugo Struck
F1000Research 12
2023
Clark, J.,... Donoghue, PCJ (2017). Parsimony and Maximum Likelihood phylogenetic analyses of morphology do not generally integrate uncertainty in inferring evolutionary history: A response to Brown et al. Proceedings of the Royal Society B: Biological Sciences, 284 (1864),[20171636].
MN Puttick , JE O’Reilly , D Oakley , AR Tanner
Concerning the evolution of opsin proteins, and the relationships between the families therein
James Frederick Fleming ,
University of Bristol
2018