Effectiveness of isolation, testing, contact tracing, and physical distancing on reducing transmission of SARS-CoV-2 in different settings: a mathematical modelling study

Adam J Kucharski , Petra Klepac , Andrew JK Conlan , Stephen M Kissler
The Lancet Infectious Diseases 20 ( 10) 1151 -1160

823
2020
Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable.

Carla Mavian , Sergei Kosakovsky Pond , Simone Marini , Brittany Rife Magalis
Proceedings of the National Academy of Sciences of the United States of America 117 ( 23) 12522 -12523

36
2020
Genomic epidemiology of circulating SARS-CoV-2 variants during first two years of the pandemic in Colombia

Cinthy Jimenez-Silva , Ricardo Rivero , Jordan Douglas , Remco Bouckaert
medRxiv 2022 -06

1
2022
Biased estimates of phylogenetic branch lengths resulting from the discretised Gamma model of site rate heterogeneity

Luca Ferretti , Tanya Golubchik , Francesco Di Lauro , Mahan Ghafari
bioRxiv 2024.08. 01.606208 -2024.08. 01.606208

2024
877
2020
Genomic epidemiology of SARS-CoV-2 variants during the first two years of the pandemic in Colombia

Cinthy Jimenez-Silva , Ricardo Rivero , Jordan Douglas , Remco Bouckaert
Communications Medicine 3 ( 1) 97 -97

13
2023
Dengue virus serotype 3 (genotype III) from Colombia: A perspective of its pathogenic potential

Daniel Rafael Miranda-Esquivel , Christian Julián Villabona-Arenas , Raquel Elvira , Flor Angela

7
2008
Detection of four dengue serotypes suggests rise in hyperendemicity in urban centers of Brazil.

Christian Julián Villabona-Arenas , Jessica Luana de Oliveira , Carla de Sousa Capra , Karime Balarini
PLOS Neglected Tropical Diseases 8 ( 2)

32
2014
Evolutionary history of Dengue virus type 4: Insights into genotype phylodynamics

Christian Julián Villabona-Arenas , Paolo Marinho de Andrade Zanotto
Infection, Genetics and Evolution 11 ( 5) 878 -885

32
2011
Genomic mosaicism in two strains of dengue virus type 3

Christian Julián Villabona-Arenas , Anderson Fernandes de Brito , Paolo Marinho de Andrade Zanotto
Infection, Genetics and Evolution 18 202 -212

5
2013
Worldwide Spread of Dengue Virus Type 1

Christian Julián Villabona-Arenas , Paolo Marinho de Andrade Zanotto
PLoS ONE 8 ( 5) e62649

102
2013
Epidemiological dynamics of an urban Dengue 4 outbreak in São Paulo, Brazil.

Christian Julián Villabona-Arenas , Jessica Luana de Oliveira , Carla de Sousa-Capra , Karime Balarini
PeerJ 4 1 -17

8
2016
Genomic epidemiology of SARS-CoV-2 in Colombia

Katherine Laiton-Donato , Christian Julián Villabona-Arenas , José A Usme-Ciro , Carlos Franco-Muñoz
medRxiv

8
2020
An Outbreak of Human Parvovirus B19 Hidden by Dengue Fever.

Nicholas Di Paola , Flávio S Mesquita , Danielle Bruna Leal de Oliveira , Christian Julián Villabona-Arenas
Clinical Infectious Diseases 68 ( 5) 810 -817

6
2019
Origin, tempo, and mode of the spread of DENV-4 Genotype IIB across the state of São Paulo, Brazil during the 2012-2013 outbreak.

Ayda Susana Ortiz-Baez , Marielton dos Passos Cunha , Danila Vedovello , Tatiana Elias Colombo
Memorias Do Instituto Oswaldo Cruz 114

6
2019
Genomic Epidemiology of Severe Acute Respiratory Syndrome Coronavirus 2, Colombia

Katherine Laiton-Donato , Christian Julián Villabona-Arenas , José A Usme-Ciro , Carlos Franco-Muñoz
Emerging Infectious Diseases 26 ( 12) 2854 -2862

5
2020
Phylogeny of dengue virus type 3 circulating in Colombia between 2001 and 2007.

Christian Julián Villabona-Arenas , Daniel Rafael Miranda-Esquivel , Raquel Elvira Ocazionez Jimenez
Tropical Medicine & International Health 14 ( 10) 1241 -1250

16
2009
Evolutionary history and spatio-temporal dynamics of dengue virus serotypes in an endemic region of Colombia.

Cinthy L Jiménez-Silva , María Fernanda Carreño , Ayda Susana Ortiz-Baez , Luz Aida Rey
PLOS ONE 13 ( 8)

10
2018
MVSE: An R-package that estimates a climate-driven mosquito-borne viral suitability index.

Uri Obolski , Pablo N. Perez , Christian J. Villabona‐Arenas , Julien Thézé
Methods in Ecology and Evolution 10 ( 8) 1357 -1370

14
2019
Characterising within-hospital SARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves

Benjamin B Lindsey , Ch Julián Villabona-Arenas , Finlay Campbell , Alexander J Keeley
Nature communications 13 ( 1) 671

16
2022