Single-tube library preparation for degraded DNA

Christian Carøe , Shyam Gopalakrishnan , Lasse Vinner , Sarah S. T. Mak
Methods in Ecology and Evolution 9 ( 2) 410 -419

215
2017
eDNA‐based biomonitoring at an experimental German vineyard to characterize how management regimes shape ecosystem diversity

Jacob Agerbo Rasmussen , Martin Nielsen , Sarah S. T. Mak , Johanna Döring
Environmental DNA 3 ( 1) 70 -82

1
2021
Genome-wide association study of behavioral, physiological and gene expression traits in outbred CFW mice.

Clarissa C Parker , Shyam Gopalakrishnan , Peter Carbonetto , Natalia M Gonzales
Nature Genetics 48 ( 8) 919 -926

78
2016
Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

Sarah Siu Tze Mak , Shyam Gopalakrishnan , Christian Carøe , Chunyu Geng
GigaScience 6 ( 8) 1 -13

201
2017
Conservation implications of elucidating the Korean wolf taxonomic ambiguity through whole-genome sequencing

Germán Hernández-Alonso , Jazmín Ramos-Madrigal , Xin Sun , Camilla Hjorth Scharff-Olsen
bioRxiv 2023 -02

2023
Evolutionary history of the extinct Sardinian dhole

Marta Maria Ciucani , Julie Kragmose Jensen , Mikkel-Holger S Sinding , Oliver Smith
Current Biology 31 ( 24) 5571 -5579

4
2021
The rise of genomics in snake venom research: recent advances and future perspectives

Wei-qiao Rao , Konstantinos Kalogeropoulos , Morten E Allentoft , Shyam Gopalakrishnan
GigaScience 11

3
2022
Uncovering the genomic basis of an extraordinary plant invasion

Vanessa C Bieker , Paul Battlay , Bent Petersen , Xin Sun
Science Advances 8 ( 34) eabo5115

4
2022
Genomes of the extinct Sicilian wolf reveal a complex history of isolation and admixture with ancient dogs

Marta Maria Ciucani , Jazmín Ramos-Madrigal , Germán Hernández-Alonso , Alberto Carmagnini
bioRxiv 2022 -01

3
2022
The extinct Sicilian wolf shows a complex history of isolation and admixture with ancient dogs

Marta Maria Ciucani , Jazmín Ramos-Madrigal , Germán Hernández-Alonso , Alberto Carmagnini
Iscience 26 ( 8)

1
2023
Mitochondrial genomes of Danish vertebrate species generated for the national DNA reference database, DNAmark

Ashot Margaryan , Christina Lehmkuhl Noer , Stine Raith Richter , Marlene Elise Restrup
Environmental DNA

27
2020
Ancient and modern genomes unravel the evolutionary history of the rhinoceros family

Shanlin Liu , Michael V Westbury , Nicolas Dussex , Kieren J Mitchell
Cell 184 ( 19) 4874 -4885. e16

59
2021
Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum)

Fátima Sánchez‐Barreiro , Shyam Gopalakrishnan , Jazmín Ramos‐Madrigal , Michael V Westbury
Molecular ecology 30 ( 23) 6355 -6369

39
2021
A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss)

Jacob Agerbo Rasmussen , Kasper Rømer Villumsen , Madeleine Ernst , Martin Hansen
Microbiome 10 ( 1) 1 -19

36
2022
Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal

Tatiana R Feuerborn , Alberto Carmagnini , Robert J Losey , Tatiana Nomokonova
Proceedings of the National Academy of Sciences 118 ( 39)

21
2021
The genome sequence of the grey wolf, Canis lupus Linnaeus 1758

Mikkel-Holger S Sinding , Shyam Gopalakrishnan , Katrine Raundrup , Love Dalén
Wellcome Open Research 6

8
2021
Contrasting genetic signal of recolonization after rainforest fragmentation in African trees with different dispersal abilities

Rosalía Piñeiro , Olivier J Hardy , Carolina Tovar , Shyam Gopalakrishnan
Proceedings of the National Academy of Sciences 118 ( 27)

7
2021
Evidence of long-term purging of mutation load in killer whale genomes

Andrew David Foote , M Thomas P Gilbert , Shyam Gopalakrishnan , Marie Louis
Biorxiv

2
2021
Genomic analyses of the extinct Sardinian dhole (Cynotherium sardous) reveal its evolutionary history

Marta Maria Ciucani , Julie Kragmose Jensen , Mikkel-Holger S Sinding , Oliver Smith
bioRxiv

2
2021