Abbas Shirinifard
机构: St. Jude Children's Research Hospital
每年引用次数
引用次数
引用: 2,598
H-指数: 21
I10-指数 : 26
出版物: 78
Computational Modeling of Choroidal Neovascularization in Age-Related Macular Degeneration
H. E. Grossniklaus , J. A. Glazier , F. Family , A. Shirinifard
Investigative Ophthalmology & Visual Science 48 ( 13) 6015 -6015
2007
Arsenic Exposure Inhibits Angiogenesis in Zebrafish via Downregulation of both VEGFA and VEGFR2
S.G. Clendenon , D. Ganapathi Sankaran , A. Shirinifard , C.W. McCollum
Microscopy and Microanalysis 19 778 -779
2013
The Role of Virtual-Tissue Computer Simulations in the Interpretation of Four-Dimensional Microscopy of Developing Tissues: The Example of Polycystic Kidney Disease
J.A. Glazier , J.M. Belmonte , S.G. Clendenon , J.S. Gens
Microscopy and Microanalysis 19 756 -757
2013
The Role of VEGF-A Overexpression and Bruch’s Membrane Defects in Choroidal Neovascularization: A Computer Simulation Study
James A. Glazier , Abbas Shirinifard
Investigative Ophthalmology & Visual Science 53 ( 14) 2988 -2988
2012
RPE Tears: An in silico Perspective
James A. Glazier , Garth G. Whelan , Abbas Shirinifard
Investigative Ophthalmology & Visual Science 53 ( 14) 5837 -5837
2012
Linking the 3D Genome Structure to Gene Expression in The Mammalian Retina
Michael Dyer , Michael Dyer , Beisi Xu , John Easton
Investigative Ophthalmology & Visual Science 59 ( 9) 3495 -3495
2018
Physical Mechanisms of Patterning Instabilities in the Formation of Vascular Network
James Glazier , Abbas Shirinifard , Shantia Yarahmadian
APS March Meeting Abstracts
2007
Correlative three-dimensional super-resolution and block-face electron microscopy of whole vitreously frozen cells
David P. Hoffman , Gleb Shtengel , C. Shan Xu , Kirby R. Campbell
Science 367 ( 6475)
207
2020
Computer simulations of cell sorting due to differential adhesion.
J.A. Zhang , Y. , Thomas , G.L.
PLOS ONE 6 ( 10)
65
2011
A Two-Tier Convolutional Neural Network for Combined Detection and Segmentation in Biological Imagery
Amirkoushyar Ziabari , Abbas Shirinifard , Matthew R Eicholtz , David J Solecki
ieee global conference on signal and information processing 1 -5
1
2019
Contact-inhibited chemotaxis in de novo and sprouting blood-vessel growth
Roeland M. H. Merks , Erica D. Perryn , Abbas Shirinifard , James A. Glazier
PLOS Computational Biology 4 ( 9)
181
2008
Adhesion Failures Determine the Pattern of Choroidal Neovascularization in the Eye: A Computer Simulation Study
Abbas Shirinifard , James Alexander Glazier , Maciej Swat , J. Scott Gens
PLOS Computational Biology 8 ( 5)
40
2012
Emergent Stratification in Solid Tumors Selects for Reduced Cohesion of Tumor Cells: A Multi-Cell, Virtual-Tissue Model of Tumor Evolution Using CompuCell3D.
Maciej H. Swat , Gilberto L. Thomas , Abbas Shirinifard , Sherry G. Clendenon
PLOS ONE 10 ( 6)
23
2015
Abstract A33: An individualized predictive 3D model of tumor response to topotecan for a patient-derived orthotopic xenograft model of pediatric neuroblastoma
Abbas Shirinifard , Suresh Thiagarajan , Yogesh T. Patel , Abigail D. Davis
Cancer Research 77
2017
Circadian gene variants and the skeletal muscle circadian clock contribute to the evolutionary divergence in longevity across Drosophila populations.
Liam C. Hunt , Jianqin Jiao , Yong-Dong Wang , David Finkelstein
Genome Research 29 ( 8) 1262 -1276
5
2019
The Cell Behavior Ontology: Describing the intrinsic biological behaviors of real and model cells seen as active agents
James P. Sluka , Abbas Shirinifard , Maciej Swat , Alin Cosmanescu
Bioinformatics 30 ( 16) 2367 -2374
30
2014
The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis.
Issam Aldiri , Beisi Xu , Lu Wang , Xiang Chen
Neuron 94 ( 3) 550 -568
180
2017
Retinal Cell Type DNA Methylation and Histone Modifications Predict Reprogramming Efficiency and Retinogenesis in 3D Organoid Cultures
Lu Wang , Daniel Hiler , Beisi Xu , Issam AlDiri
Cell Reports 22 ( 10) 2601 -2614
37
2018
Targeting the DNA repair pathway in Ewing sarcoma
Elizabeth Stewart , Ross Goshorn , Cori Bradley , Lyra M. Griffiths
Cell Reports 9 ( 3) 829 -840
108
2014
Deep multiomics profiling of brain tumors identifies signaling networks downstream of cancer driver genes.
Hong Wang , Alexander K Diaz , Timothy I Shaw , Yuxin Li
Nature Communications 10 ( 1) 3718
45
2019