Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups

Michael S. Robeson , David W. Ussery , Trudy M. Wassenaar , Zulema Udaondo
Communications Biology 4 ( 1) 1 -12

2021
What can we learn from over 100,000 Escherichia coli genomes?

Kaleb Abram , Zulema Udaondo , Carissa Bleker , Visanu Wanchai
bioRxiv 708131

7
2019
Ebolavirus comparative genomics.

Se-Ran Jun , Michael R. Leuze , Intawat Nookaew , Edward C. Uberbacher
Fems Microbiology Reviews 39 ( 5) 764 -778

31
2015
ProdMX: Rapid query and analysis of protein functional domain based on compressed sparse matrices.

Visanu Wanchai , Intawat Nookaew , David W. Ussery
Computational and structural biotechnology journal 18 3890 -3896

2020
In silico Selection of Amplification Targets for Rapid Polymorphism Screening in Ebola Virus Outbreaks.

Trudy M. Wassenaar , Visanu Wanchai , Gregory S. Buzard , David W. Ussery
Frontiers in Microbiology 10 857

2019
Decoding the Epitranscriptional Landscape from Native RNA Sequences

Piroon Jenjaroenpun , Thidathip Wongsurawat , Taylor D Wadley , Trudy M Wassenaar
bioRxiv 487819

94
2018
Genome-Based Comparison of Clostridioides difficile : Average Amino Acid Identity Analysis of Core Genomes

Adriana Cabal , Se-Ran Jun , Piroon Jenjaroenpun , Visanu Wanchai
Microbial Ecology 76 ( 3) 801 -813

3
2018
1
2019
dBBQs: dataBase of Bacterial Quality scores.

Visanu Wanchai , Preecha Patumcharoenpol , Intawat Nookaew , David Ussery
BMC Bioinformatics 18 ( 14) 147 -153

6
2017
Suggested mechanisms for Zika virus causing microcephaly: what do the genomes tell us?

Se-Ran Jun , Trudy M. Wassenaar , Visanu Wanchai , Preecha Patumcharoenpol
BMC Bioinformatics 18 ( 14) 471

14
2017
Diversity of Pseudomonas Genomes, Including Populus-Associated Isolates, as Revealed by Comparative Genome Analysis.

Se-Ran Jun , Trudy M. Wassenaar , Intawat Nookaew , Loren Hauser
Applied and Environmental Microbiology 82 ( 1) 375 -383

36
2016
Two SARS-CoV-2 genome sequences of isolates from rural US patients harboring the D614G mutation, obtained using Nanopore sequencing

Piroon Jenjaroenpun , Visanu Wanchai , Kikumi D Ono-Moore , Jennifer Laudadio
Microbiology resource announcements 10 ( 1) 10.1128/mra. 01109 -20

15
2021
CReSIL: accurate identification of extrachromosomal circular DNA from long-read sequences

Visanu Wanchai , Piroon Jenjaroenpun , Thongpan Leangapichart , Gerard Arrey
Briefings in Bioinformatics 23 ( 6) bbac422 -bbac422

14
2022
Native RNA or cDNA sequencing for transcriptomic analysis: a case study on Saccharomyces cerevisiae

Thidathip Wongsurawat , Piroon Jenjaroenpun , Visanu Wanchai , Intawat Nookaew
Frontiers in Bioengineering and Biotechnology 10 842299 -842299

8
2022
Nanopore sequencing for detection and characterization of phosphorothioate modifications in native DNA sequences

Taylor Wadley , Sun Hee Moon , Michael S DeMott , Visanu Wanchai
Frontiers in microbiology 13 871937 -871937

4
2022
Insights from comparative genomics of the genus Salmonella

Trudy M Wassenaar , Se-Ran Jun , Visanu Wanchai , Preecha Patumcharoenpol
Current Topics in Salmonella and Salmonellosis

4
2017
Conservation of two-component signal transduction systems in E. coli, Salmonella, and across 100,000 bacteria of various bacterial phyla

Trudy M Wassenaar , Visanu Wanchai , Duah Alkam , Intawat Nookaew
Molecular Mechanisms of Microbial Evolution 153 -174

3
2018
High NEK2 expression in myeloid progenitors suppresses T cell immunity in multiple myeloma

Yan Cheng , Fumou Sun , Daisy V Alapat , Visanu Wanchai
Cell Reports Medicine 4 ( 10)

2
2023
Refining the identity of mesenchymal cell types associated with murine periosteal and endosteal bone

Intawat Nookaew , Jinhu Xiong , Melda Onal , Cecile Bustamante-Gomez
Journal of Biological Chemistry 300 ( 4)

1
2024
CReSIL: accurate identification of extrachromosomal circular DNA from long-read sequences (vol 23, bbac422, 2022)

Visanu Wanchai , Piroon Jenjaroenpun , Thangpan Leangapichart , Gerard Arrey
BRIEFINGS IN BIOINFORMATICS 24 ( 6)

2023