引用次数
引用: 7,983
H-指数: 27
I10-指数 : 39
出版物: 111
Optimal experimental design in an epidermal growth factor receptor signalling and down-regulation model.
F.P. Casey , R.N. Gutenkunst , C.R. Myers , D. Baird
Iet Systems Biology 1 ( 3) 190 -202
63
2007
Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells
I. M. Min , J. J. Waterfall , L. J. Core , R. J. Munroe
Genes & Development 25 ( 7) 742 -754
256
2011
Recurrent epimutation of SDHC in gastrointestinal stromal tumors.
J. K. Killian , M. Miettinen , R. L. Walker , Y. Wang
Science Translational Medicine 6 ( 268)
172
2014
Extracting falsifiable predictions from sloppy models.
R. N. GUTENKUNST , F. P. CASEY , J. J. WATERFALL , C. R. MYERS
Annals of the New York Academy of Sciences 1115 ( 1) 203 -211
42
2007
Massively-Parallel Sequencing Of Nascent RNA Sequencing Reveals Widespread Pausing And Divergent Initiation From Mammalian Promoters
Leighton J Core , John T Lis , Irene Min , Joshua J Waterfall
The FASEB Journal 23
2009
Splicing patterns in SF3B1 mutated uveal melanoma generate shared immunogenic tumor-specific neo-epitopes.
Nathalie Cassoux , Sophie Piperno-Neumann , Sebastian Amigorena , Olivier Lantz
Cancer Discovery
2021
Contribution of resident and circulating precursors to tumor-infiltrating CD8 + T cell populations in non-small cell lung cancer patients
Paul Gueguen , Christina Metoikidou , Thomas Dupic , Myriam Lawand
bioRxiv
2020
Avalanching mutations in biallelic mismatch repair deficiency syndrome
Joshua J Waterfall , Paul S Meltzer
Nature Genetics 47 ( 3) 194 -196
3
2015
High prevalence of MAP2K1 mutations in variant and IGHV4-34-expressing hairy-cell leukemias
Joshua J Waterfall , Evgeny Arons , Robert L Walker , Marbin Pineda
Nature Genetics 46 ( 1) 8 -10
167
2014
ATRT-35. SMARCB1-DEFICIENT TUMORS ACTIVATE BOTH INNATE AND ADAPTIVE IMMUNE RESPONSES AND ARE SUSCEPTIBLE TO CHECKPOINT BLOCKADE AND TLR3 ACTIVATION
Amaury Leruste , Pamela Caudana , Arnault Tauziede-Espariat , Zhi-Yan Han
Neuro-oncology 20
2018
Epigenetically controlled tumor antigens derived from splice junctions between exons and transposable elements
Marianne Burbage , Ares Rocañín-Arjó , Blandine Baudon , Yago A Arribas
Science Immunology 8 ( 80) eabm6360
1
2023
Identification of tissue of origin and guided therapeutic applications in cancers of unknown primary using deep learning and RNA sequencing (TransCUPtomics)
Julien Vibert , Gaëlle Pierron , Camille Benoist , Nadège Gruel
The Journal of Molecular Diagnostics 23 ( 10) 1380 -1392
6
2021
Noncanonical splicing junctions between exons and transposable elements represent a source of immunogenic recurrent neo-antigens in patients with lung cancer
Antonela Merlotti , Benjamin Sadacca , Yago A Arribas , Mercia Ngoma
Science immunology 8 ( 80) eabm6359
1
2023
Evolution of synchronous female bilateral breast cancers and response to treatment
Anne-Sophie Hamy , Judith Abécassis , Keltouma Driouch , Lauren Darrigues
Nature Medicine 29 ( 3) 646 -655
2023
Multi-omics comparison of malignant and normal uveal melanocytes reveals novel molecular features of uveal melanoma
David Gentien , Elnaz Saberi-Ansari , Nicolas Servant , Ariane Jolly
bioRxiv 2022 -03
1
2022
Induction of transposable element expression is central to innate sensing
Derek C Rookhuizen , Pierre-Emmanuel Bonte , Mengliang Ye , Thomas Hoyler
bioRxiv 2021 -09
6
2021
Multi-omics comparison of malignant and normal uveal melanocytes reveals molecular features of uveal melanoma
David Gentien , Elnaz Saberi-Ansari , Nicolas Servant , Ariane Jolly
Cell reports 42 ( 9)
1
2023
Community assessment of methods to deconvolve cellular composition from bulk gene expression
Brian S White , Aurélien de Reyniès , Aaron M Newman , Joshua J Waterfall
bioRxiv 2022.06. 03.494221 -2022.06. 03.494221
7
2022
A tumor deconvolution DREAM challenge: inferring immune infiltration from bulk gene expression data
Brian S White , Andrew J Gentles , Aurélien de Reyniès , Aaron M Newman
Cancer Research 79 ( 13_Supplement) 1690 -1690
5
2019
Common molecular subtypes among Asian hepatocellular carcinoma and cholangiocarcinoma
Jittiporn Chaisaingmongkol , Anuradha Budhu , Hien Dang , Siritida Rabibhadana
Cancer 1
1
2018