20
2018
Self-Tuning Spectral Clustering for Full-length Viral Quasispecies Reconstruction with PacBio Long Reads

Xiaoli Jiao , Hiromi Imamichi , Tauseef Rehman , Rishub Nahar
international conference on bioinformatics 587 -587

2017
Profiles of Long Non-Coding RNAs and mRNA Expression in Human Macrophages Regulated by Interleukin-27.

Xiaojun Hu , Suranjana Goswami , Ju Qiu , Qian Chen
International Journal of Molecular Sciences 20 ( 24) 6207

12
2019
STING is an essential mediator of the Ku70-mediated production of IFN-λ1 in response to exogenous DNA.

Hongyan Sui , Ming Zhou , Hiromi Imamichi , Xiaoli Jiao
Science Signaling 10 ( 488)

94
2017
DAVID gene ID conversion tool

Da Wei Huang , Brad T. Sherman , Robert Stephens , Michael W. Baseler
Bioinformation 2 ( 10) 428 -430

128
2008
Evolution of the pygmy phenotype: evidence of positive selection from genome-wide scans in African, Asian, and Melanesian pygmies

Andrea Bamberg Migliano , Irene Gallego Romero , Mait Metspalu , Matthew Leavesley
Human Biology 85 ( 1) 251 -284

69
2013
Longitudinal HIV sequencing reveals reservoir expression leading to decay which is obscured by clonal expansion.

Marilia Rita Pinzone , D. Jake VanBelzen , Sam Weissman , Maria Paola Bertuccio
Nature Communications 10 ( 1) 728 -728

60
2019
Interleukin-27 Induces Interferon-Inducible Genes: Analysis of Gene Expression Profiles Using Affymetrix Microarray and DAVID

Tomozumi Imamichi , Jun Yang , Da Wei Huang , Brad Sherman
Methods in Molecular Biology 820 25 -53

12
2012
Proviral sequencing suggests the majority of the HIV reservoir is expressed over time but significant decay is obscured by clonal expansion

Marilia Rita Pinzone , D. Jake VanBelzen , Sam Weissman , Maria Paola Bertuccio
bioRxiv 348409

2018
Characterization of chemokine and chemokine receptor expression during Pneumocystis infection in healthy and immunodeficient mice

Lisa R. Bishop , Michail S. Lionakis , Monica Sassi , Philip M. Murphy
Microbes and Infection 17 ( 9) 638 -650

4
2015
Genome-Wide Analyses of MicroRNA Profiling in Interleukin-27 Treated Monocyte-Derived Human Dendritic Cells Using Deep Sequencing: A Pilot Study.

Xiaojun Hu , Qian Chen , Bharatwaj Sowrirajan , Marjorie Bosche
International Journal of Molecular Sciences 18 ( 5) 925

6
2017
β-Glucans Are Masked but Contribute to Pulmonary Inflammation During Pneumocystis Pneumonia.

Geetha Kutty , A. Sally Davis , Gabriela A. Ferreyra , Ju Qiu
The Journal of Infectious Diseases 214 ( 5) 782 -791

21
2016
Towards Better Precision Medicine: PacBio Single-Molecule Long Reads Resolve the Interpretation of HIV Drug Resistant Mutation Profiles at Explicit Quasispecies (Haplotype) Level.

Castle Raley Da Wei Huang , Min Kang Jiang , Xin Zheng , Dun Liang
Journal of Data Mining in Genomics & Proteomics 7 ( 1) 1 -7

19
2016
EMAAS: An extensible grid-based Rich Internet Application for microarray data analysis and management

G Barton , J Abbott , N Chiba , DW Huang
BMC Bioinformatics 9 ( 1) 493 -493

12
2008
Huang da

BT Sherman
W., Tan, Q., Guo, Y., Bour, S., Liu, D., Stephens, R., Baseler, MW, Lane, HC and Lempicki, RA 426 -437

60
2007
Global Changes in Gene Expression During HIV Infection and Antiretroviral Therapy.

G Dennis , J Yang , M Bosch , DA Hosack
Abstracts 10th Conference on Retroviruses and Opportunistic Infections, February 10-14, 2003, Hynes Convention Center, Boston, Massachusetts, USA/sponsored by the Foundation for Retrovirology and Human Health...[et al.]. Conference on Retroviruses and Opportunistic Infections (10th: 2003: Boston, Mass.) 10 abstract no. 474 -abstract no. 474

2003