Rethinking Gene Regulatory Networks in Light of Alternative Splicing, Post-Translational Modifications, and Intrinsically Disordered Protein Domains

K Niklas , S Bondos , A Dunker , S Newman
Name: Frontiers in Cell and Developmental Biology 3 ( 10)

1
2015
Context-dependent HOX transcription factor function in health and disease

Sarah E. Bondos , Gabriela Geraldo Mendes , Amanda Jons
Progress in Molecular Biology and Translational Science 174 225 -262

2
2020
Generating Context-Specific Functions with Intrinsically Disordered Domains

Ying Liu , Kathleen S. Matthews , Sarah E. Bondos
Biophysical Journal 100 ( 3) 1 -5

2011
Mechanically-Tunable, Protein-Based Materials Can be Functionalized with Other Proteins and with DNA

David Howell , Shang-Pu Tsai , Kelly Churion , Jan Patterson
Biophysical Journal 110 ( 3) 338

2016
Separating full-length protein from aggregating proteolytic products using filter flow-through purification.

Kelly A. Churion , Robert E. Rogers , Kayla J. Bayless , Sarah E. Bondos
Analytical Biochemistry 514 8 -11

2016
Internal regulatory interactions determine DNA binding specificity by a Hox transcription factor.

Ying Liu , Kathleen S. Matthews , Sarah E. Bondos
Journal of Molecular Biology 390 ( 4) 760 -774

31
2009
Functionalization and Patterning of Protein‐Based Materials Using Active Ultrabithorax Chimeras

Zhao Huang , Taha Salim , Autumn Brawley , Jan Patterson
Advanced Functional Materials 21 ( 14) 2633 -2640

14
2011
Intrinsically disordered proteins and multicellular organisms.

A. Keith Dunker , Sarah E. Bondos , Fei Huang , Christopher J. Oldfield
Seminars in Cell & Developmental Biology 37 44 -55

81
2015
Ultrabithorax, an Intrinsically Disordered Protein, Selects Protein Interactions by Topology

Sarah E. Bondos , Hao-Ching Hsiao , Daniel J. Catanese , Kristopher Jordy
Biophysical Journal 102 ( 3) 633a

2012
2012
Multiple Intrinsically Disordered Sequences Alter DNA Binding by the Homeodomain of theDrosophilaHox Protein Ultrabithorax

Ying Liu , Kathleen S. Matthews , Sarah E. Bondos
Journal of Biological Chemistry 283 ( 30) 20874 -20887

69
2008
Rethinking gene regulatory networks in light of alternative splicing, intrinsically disordered protein domains, and post-translational modifications.

Karl J. Niklas , Sarah E. Bondos , A. Keith Dunker , Stuart A. Newman
Frontiers in Cell and Developmental Biology 3 8 -8

101
2015
Hox Transcription Factor Ultrabithorax Ib Physically and Genetically Interacts with Disconnected Interacting Protein 1, a Double-stranded RNA-binding Protein

Sarah E. Bondos , Daniel J. Catanese , Xin-Xing Tan , Alicia Bicknell
Journal of Biological Chemistry 279 ( 25) 26433 -26444

24
2004
Flexibility and Disorder in Gene Regulation: LacI/GalR and Hox Proteins

Sarah E. Bondos , Liskin Swint-Kruse , Kathleen S. Matthews
Journal of Biological Chemistry 290 ( 41) 24669 -24677

16
2015
CDK8-Cyclin C Mediates Nutritional Regulation of Developmental Transitions through the Ecdysone Receptor in Drosophila

Xiao-Jun Xie , Fu-Ning Hsu , Xinsheng Gao , Wu Xu
PLOS Biology 13 ( 7) e1002207

43
2015
Materials composed of the Drosophila Hox protein Ultrabithorax are biocompatible and nonimmunogenic.

Jan L. Patterson , Angela M. Arenas-Gamboa , Ting-Yi Wang , Hao-Ching Hsiao
Journal of Biomedical Materials Research Part A 103 ( 4) 1546 -1553

4
2015
Materials composed of the Drosophila melanogaster protein ultrabithorax are cytocompatible.

Jan L. Patterson , Colette A. Abbey , Kayla J. Bayless , Sarah E. Bondos
Journal of Biomedical Materials Research Part A 102 ( 1) 97 -104

6
2014
Reverse Regulation: Controlling Intrinsically Disordered Domains with Structured Elements

Ying Liu , Annie Huang , Jordan McIntyre , Sarah E. Bondos
Biophysical Journal 98 ( 3) 258a -8

2010