SCRUM-Japan genesis virtual sequencing (VSQ) project: A novel algorithm combining deep learning (DL) with pathological diagnostics to enable the prediction of BRAF mutations and microsatellite instability (MSI) in advanced colorectal cancer (CRC).
Takayuki Yoshino , Daisuke Kotani , Junji Hashimoto , Satoshi Fujii
Journal of Clinical Oncology 39 112 -112
2021
Latest developments in Semantic Web technologies applied to the glycosciences
Kiyoko F. Aoki-Kinoshita , Nobuyuki P. Aoki , Akihiro Fujita , Noriaki Fujita
Perspectives on Science 11 18 -23
2017
Human C21orf63 is a Heparin-binding Protein
Kanae Mitsunaga , Jun Harada-Itadani , Toshihide Shikanai , Hiroaki Tateno
Journal of Biochemistry 146 ( 3) 369 -373
10
2009
Klotho-related Protein Is a Novel Cytosolic Neutral β-Glycosylceramidase
Yasuhiro Hayashi , Nozomu Okino , Yoshimitsu Kakuta , Toshihide Shikanai
Journal of Biological Chemistry 282 ( 42) 30889 -30900
70
2007
Introducing glycomics data into the Semantic Web
Kiyoko F Aoki-Kinoshita , Jerven Bolleman , Matthew P Campbell , Shin Kawano
Journal of Biomedical Semantics 4 ( 1) 39 -39
33
2013
GlyTouCan 1.0--The international glycan structure repository.
Kiyoko Aoki-Kinoshita , Sanjay Agravat , Nobuyuki P. Aoki , Sena Arpinar
Nucleic Acids Research 44 1237 -1242
58
2016
GlycoRDF: an ontology to standardize glycomics data in RDF.
Rene Ranzinger , Kiyoko F. Aoki-Kinoshita , Matthew P. Campbell , Shin Kawano
Bioinformatics 31 ( 6) 919 -925
35
2015
The Lectin Frontier Database (LfDB), and Data Generation Based on Frontal Affinity Chromatography
Jun Hirabayashi , Hiroaki Tateno , Toshihide Shikanai , Kiyoko Aoki-Kinoshita
Molecules 20 ( 1) 951 -973
27
2015
A strategy for identification of oligosaccharide structures using observational multistage mass spectral library
Akihiko Kameyama , Norihiro Kikuchi , Shuuichi Nakaya , Hiromi Ito
Analytical Chemistry 77 ( 15) 4719 -4725
117
2005
GGDonto ontology as a knowledge-base for genetic diseases and disorders of glycan metabolism and their causative genes.
Elena Solovieva , Toshihide Shikanai , Noriaki Fujita , Hisashi Narimatsu
Journal of Biomedical Semantics 9 ( 1) 14 -14
2
2018
Identification of Poly-N-Acetyllactosamine-Carrying Glycoproteins from HL-60 Human Promyelocytic Leukemia Cells Using a Site-Specific Glycome Analysis Method, Glyco-RIDGE.
Akira Togayachi , Azusa Tomioka , Mika Fujita , Masako Sukegawa
Journal of the American Society for Mass Spectrometry 29 ( 6) 1138 -1152
7
2018
Glycoproteomics-based cancer marker discovery adopting dual enrichment with Wisteria floribunda agglutinin for high specific glyco-diagnosis of cholangiocarcinoma
Atsushi Matsuda , Atsushi Kuno , Hideki Matsuzaki , Toru Kawamoto
Journal of Proteomics 85 1 -11
50
2013
Human ZG16p recognizes pathogenic fungi through non-self polyvalent mannose in the digestive system
Hiroaki Tateno , Rikio Yabe , Takashi Sato , Azusa Shibazaki
Glycobiology 22 ( 2) 210 -220
28
2012
RNAi screening of human glycogene orthologs in the nematode Caenorhabditis elegans and the construction of the C. elegans glycogene database.
Sayaka Akiyoshi , Kazuko H Nomura , Katsufumi Dejima , Daisuke Murata
Glycobiology 25 ( 1) 8 -20
13
2015
A novel catabolic pathway of glycosphingolipids mediated with a Klotho-related protein
Yasuhiro Hayashi , Nozomu Okino , Yoshimitsu Kakuta , Toshihide Shikanai
Chemistry and Physics of Lipids 149 S79
2007
Large-scale Identification of N-Glycosylated Proteins of Mouse Tissues and Construction of a Glycoprotein Database, GlycoProtDB
Hiroyuki Kaji , Toshihide Shikanai , Akiko Sasaki-Sawa , Hongling Wen
Journal of Proteome Research 11 ( 9) 4553 -4566
68
2012
WURCS: The Web3 Unique Representation of Carbohydrate Structures
Kenichi Tanaka , Kiyoko F. Aoki-Kinoshita , Masaaki Kotera , Hiromichi Sawaki
Journal of Chemical Information and Modeling 54 ( 6) 1558 -1566
38
2014
Rapid Screening Using Pathomorphologic Interpretation to Detect BRAF V600E Mutation and Microsatellite Instability in Colorectal Cancer
Satoshi Fujii , Daisuke Kotani , Masahiro Hattori , Masato Nishihara
Clinical Cancer Research 28 ( 12) 2623 -2632
1
2022
Development of an International Glycan Structure Repository
Kiyoko Aoki-Kinoshita , Sanjay Agravat , Nobuyuki P Aoki , Sena Arpinar
GLYCOBIOLOGY 24 ( 11) 1106 -1106
2014
GlycoGene database (GGDB) on the semantic web
Hisashi Narimatsu , Yoshinori Suzuki , Kiyoko F Aoki-Kinoshita , Noriaki Fujita
A practical guide to using glycomics databases 163 -175
10
2017