Asterias: A Parallelized Web-based Suite for the Analysis of Expression and aCGH Data

Ramón Díaz-Uriarte , Andreu Alibés , Oscar M. Rueda , Andrés Cañada
Cancer Informatics 3 ( 1) 1 -9

3
2007
Galactic Cosmic Rays from Superbubbles and the Abundances of Lithium, Beryllium, and Boron

Javier Labay , Andreu Alibés , Ramon Canal
The Astrophysical Journal 571 ( 1) 326 -333

39
2002
Using protein design algorithms to understand the molecular basis of disease caused by protein–DNA interactions: the Pax6 example

Andreu Alibés , Alejandro D. Nadra , Federico De Masi , Martha L. Bulyk
Nucleic Acids Research 38 ( 21) 7422 -7431

43
2010
Using a structural and logics systems approach to infer bHLH–DNA binding specificity determinants

Federico De Masi , Christian A. Grove , Anastasia Vedenko , Andreu Alibés
Nucleic Acids Research 39 ( 11) 4553 -4563

54
2011
Computational Prediction of HIV-1 Resistance to Protease Inhibitors.

Ali Hosseini , Andreu Alibés , Marc Noguera-Julian , Victor Gil
Journal of Chemical Information and Modeling 56 ( 5) 915 -923

11
2016
Molecular basis of xeroderma pigmentosum group C DNA recognition by engineered meganucleases

Pilar Redondo , Jesús Prieto , Inés G. Muñoz , Andreu Alibés
Nature 456 ( 7218) 107 -111

145
2008
MYCL is a target of a BET bromodomain inhibitor, JQ1, on growth suppression efficacy in small cell lung cancer cells

Fuyumi Kato , Francesco Paolo Fiorentino , Andreu Alibés , Manuel Perucho
Oncotarget 7 ( 47) 77378 -77388

46
2016
HumMeth27QCReport: an R package for quality control and primary analysis of Illumina Infinium methylation data

Francesco M Mancuso , Magda Montfort , Anna Carreras , Andreu Alibés
BMC Research Notes 4 ( 1) 546 -546

18
2011
Integration of multi-omics data of a genome-reduced bacterium: Prevalence of post-transcriptional regulation and its correlation with protein abundances

Wei-Hua Chen , Vera van Noort , Maria Lluch-Senar , Marco L. Hennrich
Nucleic Acids Research 44 ( 3) 1192 -1202

38
2016
132
2006
Light Element Evolution at the Solar Neighborhood

Andreu Alibés , Javier Labay , Ramon Canal
Symposium - International Astronomical Union 198 563 -564

2000
1
2020
DNA-binding specificity prediction with FoldX.

Alejandro D. Nadra , Luis Serrano , Andreu Alibés
Methods in Enzymology 498 3 -18

8
2011
IDconverter and IDClight: Conversion and annotation of gene and protein IDs

Andreu Alibés , Patricio Yankilevich , Andrés Cañada , Ramón Díaz-Uriarte
BMC Bioinformatics 8 ( 1) 9 -9

130
2007
Epigenetic and transcriptional dysregulation of VWA2 associated with a MYC-driven oncogenic program in colorectal cancer

Beatriz González , Ferran Fece de la Cruz , Johanna Kristina Samuelsson , Andreu Alibés
Scientific Reports 8 ( 1) 11097

2
2018
MyMpn: a database for the systems biology model organism Mycoplasma pneumoniae

Judith AH Wodke , Andreu Alibés , Luca Cozzuto , Antonio Hermoso
Nucleic acids research 43 ( D1) D618 -D623

38
2014
Structure-based DNA-binding prediction and design

Andreu Alibés , Luis Serrano , Alejandro D Nadra
Engineered Zinc Finger Proteins: Methods and Protocols 77 -88

15
2010
Analysis of somatic DNA methylation alterations of genes encoding cell surface metallopeptidases in colorectal cancer

Sergio Alonso , Beatriz González , Andreu Alibés , Manuel Perucho
Proteases and Cancer: Methods and Protocols 271 -294

2
2018
Asterias: an example of using R in a web-based bioinformatics suite of tools

Ramón Dıaz-Uriarte , Andrés Canada , Edward R Morrissey , Oscar Rueda
Book of Abstracts 31 -31