Predicting protein-protein interactions, interaction sites and residue-residue contact matrices with machine learning techniques

作者: Tianchuan Du

DOI:

关键词: Residue (complex analysis)Protein–protein interactionArtificial intelligenceMachine learningEngineering

摘要:

参考文章(66)
Piero Fariselli, Florencio Pazos, Alfonso Valencia, Rita Casadio, Prediction of protein--protein interaction sites in heterocomplexes with neural networks. FEBS Journal. ,vol. 269, pp. 1356- 1361 ,(2002) , 10.1046/J.1432-1033.2002.02767.X
Raja Jothi, Praveen F. Cherukuri, Asba Tasneem, Teresa M. Przytycka, Co-evolutionary Analysis of Domains in Interacting Proteins Reveals Insights into Domain–Domain Interactions Mediating Protein–Protein Interactions Journal of Molecular Biology. ,vol. 362, pp. 861- 875 ,(2006) , 10.1016/J.JMB.2006.07.072
Farouq S. Mjalli, S. Al-Asheh, H.E. Alfadala, Use of artificial neural network black-box modeling for the prediction of wastewater treatment plants performance. Journal of Environmental Management. ,vol. 83, pp. 329- 338 ,(2007) , 10.1016/J.JENVMAN.2006.03.004
Robert D. Finn, Benjamin L. Miller, Jody Clements, Alex Bateman, iPfam: a database of protein family and domain interactions found in the Protein Data Bank Nucleic Acids Research. ,vol. 42, pp. 364- 373 ,(2014) , 10.1093/NAR/GKT1210
Hung Xuan Ta, Liisa Holm, Evaluation of different domain-based methods in protein interaction prediction Biochemical and Biophysical Research Communications. ,vol. 390, pp. 357- 362 ,(2009) , 10.1016/J.BBRC.2009.09.130
Barbara Brannetti, Gianluca Via, Allegra, Cestra, GIOVANNI CESARENI, MANUELA HELMER CITTERICH, SH3-SPOT: an algorithm to predict preferred ligands to different members of the SH3 gene family. Journal of Molecular Biology. ,vol. 298, pp. 313- 328 ,(2000) , 10.1006/JMBI.2000.3670
Yanay Ofran, Burkhard Rost, Predicted protein–protein interaction sites from local sequence information FEBS Letters. ,vol. 544, pp. 236- 239 ,(2003) , 10.1016/S0014-5793(03)00456-3
Benjamin A Shoemaker, Anna R Panchenko, Deciphering Protein–Protein Interactions. Part I. Experimental Techniques and Databases PLOS Computational Biology. ,vol. 3, ,(2007) , 10.1371/JOURNAL.PCBI.0030042
Lise Getoor, Lilyana Mihalkova, Learning statistical models from relational data international conference on management of data. pp. 1195- 1198 ,(2011) , 10.1145/1989323.1989451