Predicted protein–protein interaction sites from local sequence information

作者: Yanay Ofran , Burkhard Rost

DOI: 10.1016/S0014-5793(03)00456-3

关键词:

摘要: … To check this hypothesis, we trained neural networks on the largest possible non-redundant … Our analysis of protein interfaces suggested that most interacting residues have other …

参考文章(39)
Piero Fariselli, Florencio Pazos, Alfonso Valencia, Rita Casadio, Prediction of protein--protein interaction sites in heterocomplexes with neural networks. FEBS Journal. ,vol. 269, pp. 1356- 1361 ,(2002) , 10.1046/J.1432-1033.2002.02767.X
Brenda A. Schulman, Andrea C. Carrano, Philip D. Jeffrey, Zachary Bowen, Elspeth R. E. Kinnucan, Michael S. Finnin, Stephen J. Elledge, J. Wade Harper, Michele Pagano, Nikola P. Pavletich, Insights into SCF ubiquitin ligases from the structure of the Skp1–Skp2 complex Nature. ,vol. 408, pp. 381- 386 ,(2000) , 10.1038/35042620
Edward M. Marcotte, Matteo Pellegrini, Michael J. Thompson, Todd O. Yeates, David Eisenberg, A combined algorithm for genome-wide prediction of protein function Nature. ,vol. 402, pp. 83- 86 ,(1999) , 10.1038/47048
Frances C. Bernstein, Thomas F. Koetzle, Graheme J.B. Williams, Edgar F. Meyer, Michael D. Brice, John R. Rodgers, Olga Kennard, Takehiko Shimanouchi, Mitsuo Tasumi, The Protein Data Bank: a computer-based archival file for macromolecular structures. Journal of Molecular Biology. ,vol. 112, pp. 535- 542 ,(1977) , 10.1016/S0022-2836(77)80200-3
David Eisenberg, Robert M. Weiss, Thomas C. Terwilliger, The helical hydrophobic moment: a measure of the amphiphilicity of a helix Nature. ,vol. 299, pp. 371- 374 ,(1982) , 10.1038/299371A0
Burkhard Rost, Chris Sander, Prediction of Protein Secondary Structure at Better than 70% Accuracy Journal of Molecular Biology. ,vol. 232, pp. 584- 599 ,(1993) , 10.1006/JMBI.1993.1413
S. Jones, J. M. Thornton, Principles of protein-protein interactions Proceedings of the National Academy of Sciences of the United States of America. ,vol. 93, pp. 13- 20 ,(1996) , 10.1073/PNAS.93.1.13
Susan Jones, Janet M Thornton, Prediction of protein-protein interaction sites using patch analysis Journal of Molecular Biology. ,vol. 272, pp. 133- 143 ,(1997) , 10.1006/JMBI.1997.1233