Molecular evolution of H9N2 avian influenza viruses in Israel.
作者： Irit Davidson , Alice Fusaro , Alireza Heidari , Isabella Monne , Giovanni Cattoli
DOI: 10.1007/S11262-014-1037-0
关键词: Molecular clock 、 Viral phylodynamics 、 Molecular evolution 、 Genetics 、 Most recent common ancestor 、 Phylogenetic tree 、 Evolutionary biology 、 Biology 、 Influenza A virus 、 Phylogenetics 、 Influenza A virus subtype H5N1
摘要: While the previous phylogenetic analyses of AIV H9N2 in Israel had mainly focused on phylogenetics and describing different virus introductions into country, for first time, H9N2-HA gene evolutionary history has been examined taking account its origin, evolution phylodynamics. The present study reveals Israeli molecular rate, clock skyline plot. plot showed two major increments population diversity sizes, which occurred 2003, second between end 2007 half 2008. Between 2004 size proved to be constant. peaks correspond appearance 3rd 4th genetic groups, as well introduction vaccines. mean rate was 6.123 E-3 substitutions/site/year, typical avian influenza viruses. time interval from most recent common ancestor 12.3 years, corresponding year 2000, when isolated Israel.
springer.com
sci-hub.se 参考文章(14)
Avian influenza and Newcastle disease Springer Milan. ,(2009) , 10.1007/978-88-470-0826-7
Ilaria Capua, Dennis J. Alexander, Avian influenza infections in birds - a moving target Influenza and Other Respiratory Viruses. ,vol. 1, pp. 11- 18 ,(2006) , 10.1111/J.1750-2659.2006.00004.X
Alexei J. Drummond, Andrew Rambaut, The Phylogenetic Handbook: Bayesian evolutionary analysis by sampling trees ,(2009) , 10.1017/CBO9780511819049.020
Giovanni Cattoli, Alice Fusaro, Isabella Monne, Fethiye Coven, Tony Joannis, Hatem S. Abd El-Hamid, Aly Ahmed Hussein, Claire Cornelius, Nadim Mukhles Amarin, Marzia Mancin, Edward C. Holmes, Ilaria Capua, Evidence for differing evolutionary dynamics of A/H5N1 viruses among countries applying or not applying avian influenza vaccination in poultry Vaccine. ,vol. 29, pp. 9368- 9375 ,(2011) , 10.1016/J.VACCINE.2011.09.127
Shimon Perk, Natalia Golender, Caroline Banet-Noach, Ester Shihmanter, Shimon Pokamunsky, Michael Pirak, Yevgenii Tendler, Michael Lipkind, Alexander Panshin, Phylogenetic analysis of hemagglutinin, neuraminidase, and nucleoprotein genes of H9N2 avian influenza viruses isolated in Israel during the 2000-2005 epizootic. Comparative Immunology Microbiology and Infectious Diseases. ,vol. 32, pp. 221- 238 ,(2009) , 10.1016/J.CIMID.2007.06.008
David E. Swayne, Daniel J. King, Avian influenza and Newcastle disease. Javma-journal of The American Veterinary Medical Association. ,vol. 222, pp. 1534- 1540 ,(2003) , 10.2460/JAVMA.2003.222.1534
Natalia Golender, Alexander Panshin, Caroline Banet-Noach, Sagit Nagar, Shimon Pokamunski, Michael Pirak, Yevgeny Tendler, Irit Davidson, Maricarmen García, Shimon Perk, Genetic characterization of avian influenza viruses isolated in Israel during 2000-2006. Virus Genes. ,vol. 37, pp. 289- 297 ,(2008) , 10.1007/S11262-008-0272-7
E. M. Sorrell, H. Wan, Y. Araya, H. Song, D. R. Perez, Minimal molecular constraints for respiratory droplet transmission of an avian–human H9N2 influenza A virus Proceedings of the National Academy of Sciences of the United States of America. ,vol. 106, pp. 7565- 7570 ,(2009) , 10.1073/PNAS.0900877106
Andrew D Morgan, Michael A Brockhurst, Laura DC Lopez-Pascua, Csaba Pal, Angus Buckling, BEAST: Bayesian evolutionary analysis by sampling trees BMC Evolutionary Biology. ,vol. 7, pp. 214- 214 ,(2007) , 10.1186/1471-2148-7-214
Sergei L. Kosakovsky Pond, Simon D. W. Frost, Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection Molecular Biology and Evolution. ,vol. 22, pp. 1208- 1222 ,(2005) , 10.1093/MOLBEV/MSI105