Surgery in the era of the 'omics revolution.

作者: A. D. Beggs , M. P. Dilworth

DOI: 10.1002/BJS.9722

关键词: GenomeDiseaseProteomicsGenome-wide association studyMedicineSurgeryGenetic testingOmicsHuman genomeGenomics

摘要: Background Surgery is entering a new phase with the revolution in genomic technology. Cheap, mass access to next-generation sequencing now allowing analysis of entire human genomes at DNA and RNA level. These data sets are being used increasingly identify molecular differences that underlie common surgical diseases, enable them be stratified for patient benefit. Methods This article reviews recent developments biology colorectal, oesophagogastric breast cancer. Results The review specifically covers genetic predisposition, studies, biomarkers stratification, prognosis treatment, other 'omics technologies such as metabolomics proteomics. Conclusion There unique opportunities over next decade change management disease radically, using these technologies. The directions this may take highlighted, including future advances 100 000 Genomes Project.

参考文章(74)
H L Tai, M H M Chan, R C K Cheung, M W M Suen, C S Ho, L C W Lit, C W K Lam, K F Ng, L K Law, Electrospray Ionisation Mass Spectrometry: Principles and Clinical Applications The Clinical biochemist. Reviews / Australian Association of Clinical Biochemists. ,vol. 24, pp. 3- 12 ,(2003)
Ben Markman, Francisco Javier Ramos, Jaume Capdevila, Josep Tabernero, EGFR and KRAS in colorectal cancer. Advances in Clinical Chemistry. ,vol. 51, pp. 71- 119 ,(2010) , 10.1016/S0065-2423(10)51004-7
K. F. Newton, W. Newman, J. Hill, Review of biomarkers in colorectal cancer. Colorectal Disease. ,vol. 14, pp. 3- 17 ,(2012) , 10.1111/J.1463-1318.2010.02439.X
Li-Dong Wang, Fu-You Zhou, Xue-Min Li, Liang-Dan Sun, Xin Song, Yan Jin, Jiang-Man Li, Guo-Qiang Kong, Hong Qi, Juan Cui, Lian-Qun Zhang, Jie-Zhi Yang, Ji-Lin Li, Xing-Chuan Li, Jing-Li Ren, Zhi-Cai Liu, Wen-Jun Gao, Ling Yuan, Wu Wei, Yan-Rui Zhang, Wei-Peng Wang, Ilyar Sheyhidin, Feng Li, Bao-Ping Chen, Shu-Wei Ren, Bin Liu, Dan Li, Jian-Wei Ku, Zong-Min Fan, Sheng-Li Zhou, Zhi-Gang Guo, Xue-Ke Zhao, Na Liu, Yong-Hong Ai, Fang-Fang Shen, Wen-Yan Cui, Shuang Song, Tao Guo, Jing Huang, Chao Yuan, Jia Huang, Yue Wu, Wen-Bin Yue, Chang-Wei Feng, Hong-Lei Li, Yan Wang, Jin-Ya Tian, Yue Lu, Yi Yuan, Wen-Liang Zhu, Min Liu, Wen-Jing Fu, Xia Yang, Han-Jing Wang, Suo-Li Han, Jie Chen, Min Han, Hai-Yan Wang, Peng Zhang, Xiu-Min Li, Jin-Cheng Dong, Guo-Lan Xing, Ran Wang, Ming Guo, Zhi-Wei Chang, Hai-Lin Liu, Li Guo, Zhi-Qing Yuan, Hai Liu, Qin Lu, Liu-Qin Yang, Fu-Guo Zhu, Xiu-Feng Yang, Xiao-Shan Feng, Zhou Wang, Yin Li, She-Gan Gao, Qirenwang Qige, Long-Tang Bai, Wen-Jun Yang, Guang-Yan Lei, Zhong-Ying Shen, Long-Qi Chen, En-Min Li, Li-Yan Xu, Zhi-Yong Wu, Wei-Ke Cao, Jian-Po Wang, Zhi-Qin Bao, Ji-Li Chen, Guang-Cheng Ding, Xiang Zhuang, Ying-Fa Zhou, Hou-Feng Zheng, Zheng Zhang, Xian-Bo Zuo, Zi-Ming Dong, Dong-Mei Fan, Xin He, Jin Wang, Qi Zhou, Qin-Xian Zhang, Xin-Ying Jiao, Shi-Yong Lian, Ai-Fang Ji, Xiao-Mei Lu, Jin-Sheng Wang, Fu-Bao Chang, Chang-Dong Lu, Zhi-Guo Chen, Jian-Jun Miao, Zeng-Lin Fan, Ruo-Bai Lin, Tai-Jiang Liu, Jin-Chang Wei, Qing-Peng Kong, Yu Lan, Yu-Jing Fan, Fu-Sheng Gao, Tian-Yun Wang, Dong Xie, Shu-Qing Chen, Wan-Cai Yang, Jun-Yan Hong, Liang Wang, Song-Liang Qiu, Zhi-Ming Cai, Xue-Jun Zhang, None, Genome-wide association study of esophageal squamous cell carcinoma in Chinese subjects identifies a susceptibility locus at PLCE1 Nature Genetics. ,vol. 42, pp. 759- 763 ,(2010) , 10.1038/NG.648
Claudia Maletzki, Fabian Schmidt, Wilhelm G. Dirks, Michael Schmitt, Michael Linnebacher, Frameshift-derived neoantigens constitute immunotherapeutic targets for patients with microsatellite-instable haematological malignancies: Frameshift peptides for treating MSI+ blood cancers European Journal of Cancer. ,vol. 49, pp. 2587- 2595 ,(2013) , 10.1016/J.EJCA.2013.02.035
Hannah Farmer, Nuala McCabe, Christopher J. Lord, Andrew N. J. Tutt, Damian A. Johnson, Tobias B. Richardson, Manuela Santarosa, Krystyna J. Dillon, Ian Hickson, Charlotte Knights, Niall M. B. Martin, Stephen P. Jackson, Graeme C. M. Smith, Alan Ashworth, Targeting the DNA repair defect in BRCA mutant cells as a therapeutic strategy Nature. ,vol. 434, pp. 917- 921 ,(2005) , 10.1038/NATURE03445
Vincent C. Chen, Sonal Varma, Tedros Bezabeh, Hélène Perreault, Erika Lattová, Matrix‐assisted laser desorption/ionization on‐target method for the investigation of oligosaccharides and glycosylation sites in glycopeptides and glycoproteins Rapid Communications in Mass Spectrometry. ,vol. 21, pp. 1644- 1650 ,(2007) , 10.1002/RCM.3007
Albert Tenesa, Malcolm G. Dunlop, New insights into the aetiology of colorectal cancer from genome-wide association studies Nature Reviews Genetics. ,vol. 10, pp. 353- 358 ,(2009) , 10.1038/NRG2574
Philip J Stephens, Patrick S Tarpey, Helen Davies, Peter Van Loo, Chris Greenman, David C Wedge, Serena Nik-Zainal, Sancha Martin, Ignacio Varela, Graham R Bignell, Lucy R Yates, Elli Papaemmanuil, David Beare, Adam Butler, Angela Cheverton, John Gamble, Jonathan Hinton, Mingming Jia, Alagu Jayakumar, David Jones, Calli Latimer, King Wai Lau, Stuart McLaren, David J McBride, Andrew Menzies, Laura Mudie, Keiran Raine, Roland Rad, Michael Spencer Chapman, Jon Teague, Douglas Easton, Anita Langerød, Oslo Breast Cancer Consortium (OSBREAC) Karesen Rolf 34 35 Schlichting Ellen 34 Naume Bjorn 35 36 Sauer Torill 35 37 Ottestad Lars 36, Ming Ta Michael Lee, Chen-Yang Shen, Benita Tan Kiat Tee, Bernice Wong Huimin, Annegien Broeks, Ana Cristina Vargas, Gulisa Turashvili, John Martens, Aquila Fatima, Penelope Miron, Suet-Feung Chin, Gilles Thomas, Sandrine Boyault, Odette Mariani, Sunil R Lakhani, Marc van de Vijver, Laura van ‘t Veer, John Foekens, Christine Desmedt, Christos Sotiriou, Andrew Tutt, Carlos Caldas, Jorge S Reis-Filho, Samuel AJR Aparicio, Anne Vincent Salomon, Anne-Lise Børresen-Dale, Andrea L Richardson, Peter J Campbell, P Andrew Futreal, Michael R Stratton, None, The landscape of cancer genes and mutational processes in breast cancer Nature. ,vol. 486, pp. 400- 404 ,(2012) , 10.1038/NATURE11017
Erica S. Rinella, Yongzhao Shao, Lauren Yackowski, Sreemanta Pramanik, Ruth Oratz, Freya Schnabel, Saurav Guha, Charles LeDuc, Christopher L. Campbell, Susan D. Klugman, Mary Beth Terry, Ruby T. Senie, Irene L. Andrulis, Mary Daly, Esther M. John, Daniel Roses, Wendy K. Chung, Harry Ostrer, Genetic Variants Associated with Breast Cancer Risk for Ashkenazi Jewish Women with Strong Family Histories but No Identifiable BRCA1/2 Mutation Human Genetics. ,vol. 132, pp. 523- 536 ,(2013) , 10.1007/S00439-013-1269-4