Full genome analysis of bovine astrovirus from fecal samples of cattle in Japan: identification of possible interspecies transmission of bovine astrovirus
作者： Makoto Nagai , Tsutomu Omatsu , Hiroshi Aoki , Konosuke Otomaru , Takehiko Uto
DOI: 10.1007/S00705-015-2543-7
关键词: Open reading frame 、 Gene 、 Phylogenetic tree 、 Viral metagenomics 、 Virology 、 Peptide sequence 、 Genome 、 Biology 、 Genetics 、 Phylogenetics 、 Lineage (genetic)
摘要: A viral metagenomics approach was used to investigate fecal samples of Japanese calves with and without diarrhea. Of the different viral pathogens detected, read counts gave nearly complete astrovirus-related RNA sequences in 15 of the 146 fecal samples collected in three distinct areas (Hokkaido, Ishikawa, and Kagoshima Prefectures) between 2009 and 2015. Due to the lack of genetic information about bovine astroviruses (BoAstVs) in Japan, these sequences were analyzed in this study. Nine of the 15 Japanese BoAstVs were …
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