Insights into mucopolysaccharidosis I from the structure and action of α- L -iduronidase

作者: Haiying Bie , Jiang Yin , Xu He , Allison R Kermode , Ethan D Goddard-Borger

DOI: 10.1038/NCHEMBIO.1357

关键词: IduronidaseMutantBiochemistryMucopolysaccharidosis IMutationMucopolysaccharidosis type IChemistryTIM barrelActive siteProtein structure

摘要: Mucopolysaccharidosis type I (MPS I), caused by mutations in the gene encoding α-L-iduronidase (IDUA), is one of approximately 70 genetic disorders collectively known as lysosomal storage diseases. To gain insight into basis for MPS I, we crystallized human IDUA produced an Arabidopsis thaliana cgl mutant. consists a TIM barrel domain containing catalytic site, β-sandwich and fibronectin-like domain. Structures bound to iduronate analogs illustrate Michaelis complex reveal (2,5)B conformation glycosyl-enzyme intermediate, which suggest retaining double displacement reaction involving nucleophilic Glu299 general acid/base Glu182. Unexpectedly, N-glycan attached Asn372 interacts with active site required enzymatic activity. Finally, these structures biochemical analysis disease-relevant P533R mutation have enabled us correlate effects clinical phenotypes.

参考文章(51)
David J. VOCADLO, Lloyd F. MACKENZIE, Shouming HE, Gregory J. ZEIKUS, Stephen G. WITHERS, Identification of glu-277 as the catalytic nucleophile of Thermoanaerobacterium saccharolyticum beta-xylosidase using electrospray MS. Biochemical Journal. ,vol. 335, pp. 449- 455 ,(1998) , 10.1042/BJ3350449
Martyn D. Winn, Garib N. Murshudov, Miroslav Z. Papiz, Macromolecular TLS refinement in REFMAC at moderate resolutions. Methods in Enzymology. ,vol. 374, pp. 300- 321 ,(2003) , 10.1016/S0076-6879(03)74014-2
Zbyszek Otwinowski, Wladek Minor, Processing of X-ray diffraction data collected in oscillation mode Methods in Enzymology. ,vol. 276, pp. 307- 326 ,(1997) , 10.1016/S0076-6879(97)76066-X
Zhanqian Yu, Anu R. Sawkar, Jeffery W. Kelly, Pharmacologic chaperoning as a strategy to treat Gaucher disease FEBS Journal. ,vol. 274, pp. 4944- 4950 ,(2007) , 10.1111/J.1742-4658.2007.06042.X
Peter R. CLEMENTS, Doug A. BROOKS, Gino T. P. SACCONE, John J. HOPWOOD, Human alpha-L-iduronidase. 1. Purification, monoclonal antibody production, native and subunit molecular mass. FEBS Journal. ,vol. 152, pp. 21- 28 ,(1985) , 10.1111/J.1432-1033.1985.TB09158.X
Laura Ruth, David Eisenberg, Elizabeth F. Neufeld, α-l-Iduronidase forms semi-crystalline spherulites with amyloid-like properties Acta Crystallographica Section D-biological Crystallography. ,vol. 56, pp. 524- 528 ,(2000) , 10.1107/S090744490000007X
Gerrit Langer, Serge X Cohen, Victor S Lamzin, Anastassis Perrakis, Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7. Nature Protocols. ,vol. 3, pp. 1171- 1179 ,(2008) , 10.1038/NPROT.2008.91
Kenneth J. Valenzano, Richie Khanna, Allan C. Powe, Robert Boyd, Gary Lee, John J. Flanagan, Elfrida R. Benjamin, Identification and characterization of pharmacological chaperones to correct enzyme deficiencies in lysosomal storage disorders. Assay and Drug Development Technologies. ,vol. 9, pp. 213- 235 ,(2011) , 10.1089/ADT.2011.0370
R. A. Laskowski, M. W. MacArthur, D. S. Moss, J. M. Thornton, PROCHECK: a program to check the stereochemical quality of protein structures Journal of Applied Crystallography. ,vol. 26, pp. 283- 291 ,(1993) , 10.1107/S0021889892009944