Gramene: a resource for comparative grass genomics
作者： Doreen Ware , Pankaj Jaiswal , Junjian Ni , Xiaokang Pan , Kuan Chang
DOI: 10.1093/NAR/30.1.103
关键词: Biotechnology 、 Computational biology 、 Controlled vocabulary 、 Resource (biology) 、 Genome 、 Common denominator 、 Genomics 、 Relational database 、 Oryza 、 Biology 、 Oryza sativa
摘要: Gramene (http://www.gramene.org) is a comparative genome mapping database for grasses and community resource rice. Rice, in addition to being an economically important crop, also model monocot understanding other agronomically grass genomes. replaces the existing AceDB ‘RiceGenes’ with relational based on Oracle. provides curated integrative information about maps, sequence, genes, genetic markers, mutants, QTLs, controlled vocabularies publications. Its aims are use rice genetic, physical sequence maps as fundamental organizing units, provide common denominator moving from one crop another serve portal interconnecting web-based resources. This paper describes initial steps we have taken towards realizing these goals.
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paperity.org参考文章(10)
Mike Gale, Graham Moore, Katrien Devos, Rice--the pivotal genome in cereal comparative genetics. Proceedings of an international conference, Los Baños, Laguna, Philippines, 27-29 March 2000.. ,vol. 236, pp. 46- 58 ,(2001) , 10.1002/9780470515778.CH5
Michael Freeling, Grasses as a Single Genetic System. Reassessment 2001 Plant Physiology. ,vol. 125, pp. 1191- 1197 ,(2001) , 10.1104/PP.125.3.1191
Chunguang Du, Edward Buckler, Spencer Muse, Development of a maize molecular evolutionary genomic database Comparative and Functional Genomics. ,vol. 4, pp. 246- 249 ,(2003) , 10.1002/CFG.282
Beat Keller, Catherine Feuillet, Colinearity and gene density in grass genomes Trends in Plant Science. ,vol. 5, pp. 246- 251 ,(2000) , 10.1016/S1360-1385(00)01629-0
S Asburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel‐Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock, Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nature Genetics. ,vol. 25, pp. 25- 29 ,(2000) , 10.1038/75556
Renato Tarchini, Phyllis Biddle, Robin Wineland, Scott Tingey, Antoni Rafalski, The Complete Sequence of 340 kb of DNA around the Rice Adh1–Adh2 Region Reveals Interrupted Colinearity with Maize Chromosome 4 The Plant Cell. ,vol. 12, pp. 381- 391 ,(2000) , 10.1105/TPC.12.3.381
M. D. Gale, K. M. Devos, Comparative genetics in the grasses Proceedings of the National Academy of Sciences of the United States of America. ,vol. 95, pp. 1971- 1974 ,(1998) , 10.1073/PNAS.95.5.1971
Marco Punta, Penny C Coggill, Ruth Y Eberhardt, Jaina Mistry, John Tate, Chris Boursnell, Ningze Pang, Kristoffer Forslund, Goran Ceric, Jody Clements, Andreas Heger, Liisa Holm, Erik LL Sonnhammer, Sean R Eddy, Alex Bateman, Robert D Finn, None, The Pfam protein families database Nucleic Acids Research. ,vol. 30, pp. 276- 280 ,(2000) , 10.1093/NAR/GKR1065
Jorge Dubcovsky, Wusirika Ramakrishna, Phillip J. SanMiguel, Carlos S. Busso, Liuling Yan, Bryan A. Shiloff, Jeffrey L. Bennetzen, Comparative Sequence Analysis of Colinear Barley and Rice Bacterial Artificial Chromosomes Plant Physiology. ,vol. 125, pp. 1342- 1353 ,(2001) , 10.1104/PP.125.3.1342
S. McCouch, Toward a plant genomics initiative: thoughts on the value of cross-species and cross-genera comparisons in the grasses. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 95, pp. 1983- 1985 ,(1998) , 10.1073/PNAS.95.5.1983