FTIR-based spectrum of salivary exosomes coupled with computational-aided discriminating analysis in the diagnosis of oral cancer.

作者: Ayelet Zlotogorski-Hurvitz , Ben Zion Dekel , Dov Malonek , Ran Yahalom , Marilena Vered

DOI: 10.1007/S00432-018-02827-6

关键词: Fourier transform infrared spectroscopyLinear discriminant analysisPrincipal component analysisAbsorbanceChemistrySalivaCancerInfrared spectroscopyReceiver operating characteristicChromatography

摘要: To determine the Fourier-transform infrared (FTIR) spectra of salivary exosomes from oral cancer (OC) patients and healthy individuals (HI) to assess its diagnostic potential using computational-aided models. Whole saliva samples were collected 21 OC 13 HI. Exosomes pelleted differential centrifugation (12,000g, 120,000g). The mid-infrared (IR) absorbance (900–5000 cm− 1 range) measured MIR8025 Oriel IR equipped with a PIKE MIRacle ZnSe attenuated total reflectance attachment. Machine learning techniques, utilized build discrimination models for data HI, included principal component analysis–linear discriminant analysis (PCA–LDA) support vector machine (SVM) classification. Sensitivity, specificity area under receiver operating characteristic curve calculated. consistently different HI at 1072 cm− 1 (nucleic acids), 2924 cm− 1 2854 cm− 1 (membranous lipids), 1543 cm− 1 (transmembrane proteins). PCA–LDA model correctly classified sensitivity 100%, 89% accuracy 95%, SVM showed training 100% cross-validation 89%. We specific spectral signature exosomes, which was accurately differentiated based on detecting subtle changes in conformations proteins, lipids nucleic acids optimized artificial neural networks small sets. This non-invasive method should be further investigated diagnosis very early stages or lesions malignant transformation.

参考文章(30)
Jacques Fantini, Nouara Yahi, Lipid Metabolism and Oxidation in Neurons and Glial Cells Brain Lipids in Synaptic Function and Neurological Disease#R##N#Clues to Innovative Therapeutic Strategies for Brain Disorders. pp. 53- 85 ,(2015) , 10.1016/B978-0-12-800111-0.00003-5
Rina K. Dukor, Vibrational Spectroscopy in the Detection of Cancer Handbook of Vibrational Spectroscopy. ,(2006) , 10.1002/0470027320.S8107
Jacques Ferlay, Isabelle Soerjomataram, Rajesh Dikshit, Sultan Eser, Colin Mathers, Marise Rebelo, Donald Maxwell Parkin, David Forman, Freddie Bray, Cancer incidence and mortality worldwide: sources, methods and major patterns in GLOBOCAN 2012. International Journal of Cancer. ,vol. 136, ,(2015) , 10.1002/IJC.29210
Natàlia Dave, Víctor A. Lórenz-Fonfría, Gérard Leblanc, Esteve Padrós, FTIR Spectroscopy of Secondary-Structure Reorientation of Melibiose Permease Modulated by Substrate Binding Biophysical Journal. ,vol. 94, pp. 3659- 3670 ,(2008) , 10.1529/BIOPHYSJ.107.115550
Suresh Mathivanan, Hong Ji, Richard J. Simpson, Exosomes: extracellular organelles important in intercellular communication. Journal of Proteomics. ,vol. 73, pp. 1907- 1920 ,(2010) , 10.1016/J.JPROT.2010.06.006
Udi Zelig, Shaul Mordechai, George Shubinsky, Ranjit Kumar Sahu, Mahmoud Huleihel, Eugene Leibovitz, Ilana Nathan, Joseph Kapelushnik, Pre-screening and follow-up of childhood acute leukemia using biochemical infrared analysis of peripheral blood mononuclear cells Biochimica et Biophysica Acta. ,vol. 1810, pp. 827- 835 ,(2011) , 10.1016/J.BBAGEN.2011.06.010
Simona Principe, Angela Bik-Yu Hui, Jeff Bruce, Ankit Sinha, Fei-Fei Liu, Thomas Kislinger, Tumor‐derived exosomes and microvesicles in head and neck cancer: Implications for tumor biology and biomarker discovery Proteomics. ,vol. 13, pp. 1608- 1623 ,(2013) , 10.1002/PMIC.201200533
YANFENG GAO, XIONGWEI HUO, LIU DONG, XUEJUN SUN, HE SAI, GUANGBING WEI, YIZHUANG XU, YUANFU ZHANG, JINGUANG WU, Fourier transform infrared microspectroscopy monitoring of 5-fluorouracil-induced apoptosis in SW620 colon cancer cells Molecular Medicine Reports. ,vol. 11, pp. 2585- 2591 ,(2015) , 10.3892/MMR.2014.3088
Ayelet Zlotogorski-Hurvitz, Dan Dayan, Gavriel Chaushu, Johanna Korvala, Tuula Salo, Raija Sormunen, Marilena Vered, Human Saliva-Derived Exosomes Comparing Methods of Isolation Journal of Histochemistry and Cytochemistry. ,vol. 63, pp. 181- 189 ,(2015) , 10.1369/0022155414564219
David T. Moore, Bryan W. Berger, William F. DeGrado, Protein-protein interactions in the membrane: sequence, structural, and biological motifs. Structure. ,vol. 16, pp. 991- 1001 ,(2008) , 10.1016/J.STR.2008.05.007