Growing and cultivating the forest genomics database, TreeGenes
作者： Taylor Falk , Nic Herndon , Emily Grau , Sean Buehler , Peter Richter
关键词: Database schema 、 Data exchange 、 Genome 、 Environmental data 、 Database 、 Data visualization 、 Genomics 、 Metadata 、 Comparative genomics 、 Computer science 、 General Biochemistry, Genetics and Molecular Biology 、 General Agricultural and Biological Sciences 、 Information Systems
摘要: Forest trees are valued sources of pulp, timber and biofuels, serve a role in carbon sequestration, biodiversity maintenance watershed stability. Examining the relationships among genetic, phenotypic environmental factors for these species provides insight on areas concern breeders researchers alike. The TreeGenes database is web-based repository that home to 1790 tree over 1500 registered users. curated archive high-throughput genomics, including reference genomes, transcriptomes, genetic maps variant data. These resources paired with extensive information layers. recently migrated Tripal, an integrated open-source schema content management system. This migration enabled developments focused data exchange, transfer improved analytical capacity, as well providing opportunity communicate following partner databases: Hardwood Genomics Web, Genome Database Rosaceae, Citrus Database. Recent development has coordinating georeferenced accessions, metadata acquisition ontological frameworks, improve integration across studies combining focus was tools enable comparative genomics visualization. By advanced importers, relevant standards platform store, submit analyze forest
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