Origins and Evolution of MicroRNA Genes in Drosophila Species

作者: Masafumi Nozawa , Sayaka Miura , Masatoshi Nei

DOI: 10.1093/GBE/EVQ009

关键词: Gene rearrangementDrosophila melanogasterBiologyDrosophila ProteinNon-coding RNAGene duplicationGenomeRegulation of gene expressionGeneticsGene

摘要: MicroRNAs (miRs) regulate gene expression at the posttranscriptional level. To obtain some insights into origins and evolutionary patterns of miR genes, we have identified genes in genomes 12 Drosophila species by bioinformatics approaches examined their changes. The results showed that extant ancestral had more than 100 frequent gains losses occurred during evolution. Although many appear to originated from random hairpin structures intronic or intergenic regions, duplication has also contributed generation new genes. Estimating rate nucleotide substitution found newly arisen a similar synonymous sites protein-coding evolve almost neutrally. This suggests most not acquired any important function would become inactive. By contrast, old show much lower rate. Moreover, paired unpaired tend remain unchanged Therefore, once functions, they evolved very slowly, maintaining essentially same for long time.

参考文章(106)
THOMAS H. JUKES, CHARLES R. CANTOR, CHAPTER 24 – Evolution of Protein Molecules Mammalian Protein Metabolism#R##N#Volume III. pp. 21- 132 ,(1969) , 10.1016/B978-1-4832-3211-9.50009-7
Hamish N. Monro, J. B. Allison, Mammalian Protein Metabolism ,(1969)
Jeremy S. Edwards, Rafael U. Ibarra, Bernhard O. Palsson, In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data Nature Biotechnology. ,vol. 19, pp. 125- 130 ,(2001) , 10.1038/84379
Austin L. Hughes, None, Near neutrality: leading edge of the neutral theory of molecular evolution. Annals of the New York Academy of Sciences. ,vol. 1133, pp. 162- 179 ,(2008) , 10.1196/ANNALS.1438.001
Martin A. Nowak, Maarten C. Boerlijst, Jonathan Cooke, John Maynard Smith, Evolution of genetic redundancy Nature. ,vol. 388, pp. 167- 171 ,(1997) , 10.1038/40618
Gary Ruvkun, Brenda J. Reinhart, Frank J. Slack, Michael Basson, Amy E. Pasquinelli, Jill C. Bettinger, Ann E. Rougvie, H. Robert Horvitz, The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans Nature. ,vol. 403, pp. 901- 906 ,(2000) , 10.1038/35002607
M. E. Hillenmeyer, E. Fung, J. Wildenhain, S. E. Pierce, S. Hoon, W. Lee, M. Proctor, R. P. St.Onge, M. Tyers, D. Koller, R. B. Altman, R. W. Davis, C. Nislow, G. Giaever, The chemical genomic portrait of yeast: uncovering a phenotype for all genes. Science. ,vol. 320, pp. 362- 365 ,(2008) , 10.1126/SCIENCE.1150021