Topological Data Analysis Made Easy with the Topology ToolKit

作者: Julien Tierny , Joshua Levine , Attila Gyulassy , Jonas Lukasczyk , Charles Gueunet

DOI:

关键词: TopologySoftwareFeature extractionEnd userPython (programming language)MathematicsVisualizationTopological data analysisVirtual machineEntry point

摘要: This tutorial presents topological methods for the analysis and visualization of scientific data from a user's perspective, with Topology ToolKit (TTK), recently released open-source library analysis. Topological have gained considerably in popularity maturity over last twenty years success stories established been documented wide range applications (combustion, chemistry, astrophysics, material sciences, etc.) both acquired simulated data, post-hoc in-situ contexts. While reference textbooks published on topic, no at IEEE VIS has covered this area recent years, never software level point-of-view. fills gap by providing beginner's introduction to practitioners, researchers, students, lecturers. In particular, instead focusing theoretical aspects algorithmic details, focuses how can be useful practice concrete tasks such as segmentation, feature extraction or tracking. The describes detail achieve these TTK. First, after an their application analysis, brief overview TTK's main entry point end users, namely ParaView, will presented. Second, features given. A running example described detail, showcasing access via Python, VTK/C++, C++. Third, hands-on sessions concretely show use TTK ParaView multiple, representative tasks. Fourth, usage presented developers, particular describing several examples projects that were built top Finally, some feedback regarding teaching platform Presenters include experts methods, core authors well active coming academia, labs, industry. large part dedicated exercises rich package (including pre-installs virtual machines, code, demos, video tutorials, provided participants. mostly targets practitioners researchers who are not but interested using them daily We also target already familiar contributing

参考文章(31)
D. Laney, P.-t. Bremer, A. Mascarenhas, P. Miller, V. Pascucci, Understanding the Structure of the Turbulent Mixing Layer in Hydrodynamic Instabilities IEEE Transactions on Visualization and Computer Graphics. ,vol. 12, pp. 1053- 1060 ,(2006) , 10.1109/TVCG.2006.186
Marc van Kreveld, René van Oostrum, Chandrajit Bajaj, Valerio Pascucci, Dan Schikore, Contour trees and small seed sets for isosurface traversal symposium on computational geometry. pp. 212- 220 ,(1997) , 10.1145/262839.269238
David Gunther, Roberto A. Boto, Juila Contreras-Garcia, Jean-Philip Piquemal, Julien Tierny, Characterizing Molecular Interactions in Chemical Systems IEEE Transactions on Visualization and Computer Graphics. ,vol. 20, pp. 2476- 2485 ,(2014) , 10.1109/TVCG.2014.2346403
P-T Bremer, G. Weber, J. Tierny, V. Pascucci, M. Day, J. Bell, Interactive Exploration and Analysis of Large-Scale Simulations Using Topology-Based Data Segmentation IEEE Transactions on Visualization and Computer Graphics. ,vol. 17, pp. 1307- 1324 ,(2011) , 10.1109/TVCG.2010.253
C. Heine, H. Leitte, M. Hlawitschka, F. Iuricich, L. De Floriani, G. Scheuermann, H. Hagen, C. Garth, A survey of topology-based methods in visualization ieee vgtc conference on visualization. ,vol. 35, pp. 643- 667 ,(2016) , 10.1111/CGF.12933
Charles Gueunet, Pierre Fortin, Julien Jomier, Julien Tierny, Contour forests: Fast multi-threaded augmented contour trees 2016 IEEE 6th Symposium on Large Data Analysis and Visualization (LDAV). pp. 85- 92 ,(2016) , 10.1109/LDAV.2016.7874333
Julien Tierny, Guillaume Favelier, Joshua A. Levine, Charles Gueunet, Michael Michaux, The Topology ToolKit IEEE Transactions on Visualization and Computer Graphics. ,vol. 24, pp. 832- 842 ,(2018) , 10.1109/TVCG.2017.2743938
Julien Tierny, Guillaume Lavoué, Pooran Memari, Florent Dupont, Ana-Maria Vintescu, Conformal Factor Persistence for Fast Hierarchical Cone Extraction eurographics. pp. 57- 60 ,(2017) , 10.2312/EGSH.20171014
Charles Gueunet, Pierre Fortin, Julien Jomier, Julien Tierny, Task-based augmented merge trees with Fibonacci heaps 2017 IEEE 7th Symposium on Large Data Analysis and Visualization (LDAV). pp. 6- 15 ,(2017) , 10.1109/LDAV.2017.8231846
Julien Tierny, Melanie Plainchault, Bruno Conche, Maxime Soler, Topologically Controlled Lossy Compression arXiv: Image and Video Processing. ,(2018)