Identification of novel Newcastle disease virus sub-genotype VII-(j) based on the fusion protein
作者： Majid Esmaelizad , Vafa Mayahi , Maryam Pashaei , Hossein Goudarzi
DOI: 10.1007/S00705-016-3189-9
关键词: Virulence 、 Biology 、 Gene 、 GenBank 、 Newcastle disease 、 Virus classification 、 Genotype 、 Virus 、 Virology 、 Genetics 、 Phylogenetic tree
摘要: Newcastle disease virus (NDV) is believed to be the cause of fatal poultry worldwide. The fusion (F) protein plays a key role in pathogenesis, and it also used for classification. In this study, we determined complete coding sequence F gene new velogenic NDV isolates with an intravenous pathogenicity index (IVPI) 1.8 mean death time (MDT) 72 or 48 h. Complete sequences genes Iranian were amplified sequenced both directions. These compared 195 nucleotide from GenBank (available as 07/17/2016). A phylogenetic tree was constructed gene, using MEGA6 software statistical analysis based on 500 bootstrap replicates. Evolutionary distances revealed that virulent Iran belonged genotype VII distinct sub-genotype named VII-(j). This showed 3% divergence VIId. Recombination these not recombinant NDVs.
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Abdollah Rahimian, Mohammad Reza Keshtkar, Mohammad Bagher Nazari, Mohammad Javad Mehrabanpour, Setareh Khoobyar, Phylogenetic characterization of the fusion genes of the Newcastle disease viruses isolated in Fars province poultry farms during 2009-2011. Veterinary research forum : an international quarterly journal. ,vol. 5, pp. 187- 191 ,(2014)
D UJVARI, Phylogenetic analysis reveals extensive evolution of avian paramyxovirus type 1 strains of pigeons (Columba livia) and suggests multiple species transmission*1 Virus Research. ,vol. 96, pp. 63- 73 ,(2003) , 10.1016/S0168-1702(03)00173-4
E. W. Aldous, J. K. Mynn, J. Banks, D.J. Alexander, A molecular epidemiological study of avian paramyxovirus type 1 (Newcastle disease virus) isolates by phylogenetic analysis of a partial nucleotide sequence of the fusion protein gene. Avian Pathology. ,vol. 32, pp. 239- 257 ,(2003) , 10.1080/030794503100009783
Diego G. Diel, Luciana H.A. da Silva, Hualei Liu, Zhiliang Wang, Patti J. Miller, Claudio L. Afonso, Genetic diversity of avian paramyxovirus type 1: proposal for a unified nomenclature and classification system of Newcastle disease virus genotypes. Infection, Genetics and Evolution. ,vol. 12, pp. 1770- 1779 ,(2012) , 10.1016/J.MEEGID.2012.07.012
Eric T. Beck, Jie He, Martha I. Nelson, Michael E. Bose, Jiang Fan, Swati Kumar, Kelly J. Henrickson, Genome Sequencing and Phylogenetic Analysis of 39 Human Parainfluenza Virus Type 1 Strains Isolated from 1997–2010 PLoS ONE. ,vol. 7, pp. e46048- ,(2012) , 10.1371/JOURNAL.PONE.0046048
Z. Xie, L. Xie, A. Chen, J. Liu, Y. Pang, X. Deng, Z. Xie, Q. Fan, Complete Genome Sequence Analysis of a Newcastle Disease Virus Isolated from a Wild Egret Journal of Virology. ,vol. 86, pp. 13854- 13855 ,(2012) , 10.1128/JVI.02669-12
Ryota Tsunekuni, Hiroshi Ito, Koichi Otsuki, Hiroshi Kida, Toshihiro Ito, Genetic comparisons between lentogenic Newcastle disease virus isolated from waterfowl and velogenic variants Virus Genes. ,vol. 40, pp. 252- 255 ,(2010) , 10.1007/S11262-009-0427-1
Kurt Swanson, Xiaolin Wen, George P. Leser, Reay G. Paterson, Robert A. Lamb, Theodore S. Jardetzky, Structure of the Newcastle disease virus F protein in the post-fusion conformation Virology. ,vol. 402, pp. 372- 379 ,(2010) , 10.1016/J.VIROL.2010.03.050
Alíz Czeglédi, Dorina Ujvári, Eszter Somogyi, Enikő Wehmann, Ortrud Werner, Béla Lomniczi, Third genome size category of avian paramyxovirus serotype 1 (Newcastle disease virus) and evolutionary implications Virus Research. ,vol. 120, pp. 36- 48 ,(2006) , 10.1016/J.VIRUSRES.2005.11.009
Sun-Hee Cho, Sun-Joong Kim, Hyuk-Joon Kwon, Genomic sequence of an antigenic variant Newcastle disease virus isolated in Korea. Virus Genes. ,vol. 35, pp. 293- 302 ,(2007) , 10.1007/S11262-007-0078-Z