An overview of bioinformatics tools for epitope prediction

作者: Ruth E. Soria-Guerra , Ricardo Nieto-Gomez , Dania O. Govea-Alonso , Sergio Rosales-Mendoza

DOI: 10.1016/J.JBI.2014.11.003

关键词: Acquired immune systemContext (language use)VaccinationIn silicoMonoclonal antibodyEpitopeBioinformaticsGenomeMajor histocompatibility complexComputer science

摘要: Display Omitted Implications of bioinformatics on the development epitope-based vaccines are described.A compilation useful tools for vaccine is presented.Implications developing against hypervariable viruses described.Perspectives field identified. Exploitation recombinant DNA and sequencing technologies has led to a new concept in vaccination which isolated epitopes, capable stimulating specific immune response, have been identified used achieve advanced formulations; replacing those constituted by whole pathogen-formulations. In this context, approaches play critical role analyzing multiple genomes select protective epitopes silico. It conceived that cocktails defined or chimeric protein arrangements, including target may provide rationale design elicit convenient humoral cellular responses. This review presents comprehensive most advantageous online immunological software searchable, order facilitate vaccines. An outlook how these supporting presented. HIV influenza taken as examples promising developments viruses. Perspectives also envisioned.

参考文章(117)
Marc H.V. Regenmortel, What is a B-cell epitope? Methods of Molecular Biology. ,vol. 524, pp. 3- 20 ,(2009) , 10.1007/978-1-59745-450-6_1
Anne S. De Groot, Leonard Moise, Julie A. McMurry, William Martin, Epitope-Based Immunome-Derived Vaccines: A Strategy for Improved Design and Safety Springer, New York, NY. pp. 39- 69 ,(2009) , 10.1007/978-0-387-79208-8_3
Christoph S Klade, Proteomics approaches towards antigen discovery and vaccine development. Current Opinion in Molecular Therapeutics. ,vol. 4, pp. 216- ,(2002)
Pedro A. Reche, Ellis L. Reinherz, Prediction of peptide-MHC binding using profiles Methods of Molecular Biology. ,vol. 409, pp. 185- 200 ,(2007) , 10.1007/978-1-60327-118-9_13
Ali Azizi, David E. Anderson, José V. Torres, Andrei Ogrel, Masoud Ghorbani, Catalina Soare, Paul Sandstrom, Jocelyne Fournier, Francisco Diaz-Mitoma, Induction of broad cross-subtype-specific HIV-1 immune responses by a novel multivalent HIV-1 peptide vaccine in cynomolgus macaques. Journal of Immunology. ,vol. 180, pp. 2174- 2186 ,(2008) , 10.4049/JIMMUNOL.180.4.2174
Irini A Doytchinova, Pingping Guan, Darren R Flower, EpiJen: a server for multistep T cell epitope prediction BMC Bioinformatics. ,vol. 7, pp. 131- 131 ,(2006) , 10.1186/1471-2105-7-131
E A Emini, J V Hughes, D S Perlow, J Boger, Induction of hepatitis A virus-neutralizing antibody by a virus-specific synthetic peptide. Journal of Virology. ,vol. 55, pp. 836- 839 ,(1985) , 10.1128/JVI.55.3.836-839.1985
Arthur M. Lesk, Introduction to Bioinformatics ,(2002)
Pierre Dönnes, Arne Elofsson, Prediction of MHC class I binding peptides, using SVMHC BMC Bioinformatics. ,vol. 3, pp. 25- 25 ,(2002) , 10.1186/1471-2105-3-25