In vivo analysis of chromatin structure.

作者: Kenneth S. Zaret

DOI: 10.1016/S0076-6879(99)04036-7

关键词: Computational biologyFunction (biology)Deoxyribonuclease IGeneticsIn vivoBiologyNucleosomeNucleusCell nucleusDNAChromatin

摘要: Publisher Summary Chromatin structure in vivo covers a wide range of cell biological and biochemical perspectives on the physical state genes nucleus. The chapter describes several techniques used to identify chromatin changes or situ . An analysis can provide information regarding gene function. discusses that is found within intact cells, permeabilized isolated nuclei. Three parameters govern ability obtain useful from experiment: quality substrate, structural specificity probe, sensitivity an assay. Each these discussed separately terms benefits hazards relevant techniques. A few references are given for each method; either clear generally accepted description experimental details illustrate novel ways which be used.

参考文章(51)
H. Richard-Foy, G. L. Hager, Sequence-specific positioning of nucleosomes over the steroid-inducible MMTV promoter. The EMBO Journal. ,vol. 6, pp. 2321- 2328 ,(1987) , 10.1002/J.1460-2075.1987.TB02507.X
M. Truss, J. Bartsch, A. Schelbert, R.J. Haché, M. Beato, Hormone induces binding of receptors and transcription factors to a rearranged nucleosome on the MMTV promoter in vivo. The EMBO Journal. ,vol. 14, pp. 1737- 1751 ,(1995) , 10.1002/J.1460-2075.1995.TB07163.X
Michael Grunstein, Histone acetylation in chromatin structure and transcription Nature. ,vol. 389, pp. 349- 352 ,(1997) , 10.1038/38664
Roger D. Kornberg, Jan W. Lapointe, Yahli Lorch, Preparation of nucleosomes and chromatin. Methods in Enzymology. ,vol. 170, pp. 3- 14 ,(1989) , 10.1016/0076-6879(89)70039-2
M. P. Kladde, M. Xu, R. T. Simpson, Direct study of DNA-protein interactions in repressed and active chromatin in living cells. The EMBO Journal. ,vol. 15, pp. 6290- 6300 ,(1996) , 10.1002/J.1460-2075.1996.TB01019.X
M Pikaart, J Feng, B Villeponteau, The polyomavirus enhancer activates chromatin accessibility on integration into the HPRT gene Molecular and Cellular Biology. ,vol. 12, pp. 5785- 5792 ,(1992) , 10.1128/MCB.12.12.5785
T.R. Hebbes, A.L. Clayton, A.W. Thorne, C. Crane-Robinson, Core histone hyperacetylation co-maps with generalized DNase I sensitivity in the chicken beta-globin chromosomal domain. The EMBO Journal. ,vol. 13, pp. 1823- 1830 ,(1994) , 10.1002/J.1460-2075.1994.TB06451.X
G Fragoso, S John, M S Roberts, G L Hager, Nucleosome positioning on the MMTV LTR results from the frequency-biased occupancy of multiple frames. Genes & Development. ,vol. 9, pp. 1933- 1947 ,(1995) , 10.1101/GAD.9.15.1933