Comparative analysis of complete chloroplast genome sequences of two tropical trees Machilus yunnanensis and Machilus balansae in the family Lauraceae

作者: Yu Song , Wenpan Dong , Bing Liu , Chao Xu , Xin Yao

DOI: 10.3389/FPLS.2015.00662

关键词: BotanyGenusIndelBiologyMolecular evolutionMachilusGenomeLauraceaePhylogeneticsMicrosatellite

摘要: … By comparing these two complete chloroplast genomes we will try to answer the … chloroplast genomes in Machilus? (2) Which types of mutation events occurred in chloroplast genomes …

参考文章(44)
Jens G. Rohwer, Jie Li, Barbara Rudolph, Sabrina A. Schmidt, Henk van der Werff, Hsi-wen Li, Is Persea (Lauraceae) monophyletic? Evidence from nuclear ribosomal ITS sequences Taxon. ,vol. 58, pp. 1153- 1167 ,(2009) , 10.1002/TAX.584009
K. Nashima, S. Terakami, C. Nishitani, M. Kunihisa, M. Shoda, M Takeuchi, N. Urasaki, K. Tarora, T. Yamamoto, H. Katayama, Complete chloroplast genome sequence of pineapple (Ananas comosus) Tree Genetics & Genomes. ,vol. 11, pp. 60- ,(2015) , 10.1007/S11295-015-0892-8
Chia-Chen Wu, Cheng-Kuen Ho, Shu-Hwa Chang, The complete chloroplast genome of Cinnamomum kanehirae Hayata (Lauraceae) Mitochondrial DNA. ,vol. 27, pp. 2681- 2682 ,(2016) , 10.3109/19401736.2015.1043541
R. K. Jansen, J. D. Palmer, A chloroplast DNA inversion marks an ancient evolutionary split in the sunflower family (Asteraceae) Proceedings of the National Academy of Sciences of the United States of America. ,vol. 84, pp. 5818- 5822 ,(1987) , 10.1073/PNAS.84.16.5818
Wenpan Dong, Han Liu, Chao Xu, Yunjuan Zuo, Zhongjian Chen, Shiliang Zhou, A chloroplast genomic strategy for designing taxon specific DNA mini-barcodes: a case study on ginsengs BMC Genetics. ,vol. 15, pp. 138- 138 ,(2014) , 10.1186/S12863-014-0138-Z
M. Shahid Masood, Tomotaro Nishikawa, Shu-ichi Fukuoka, Peter K. Njenga, Takahiko Tsudzuki, Koh-ichi Kadowaki, The complete nucleotide sequence of wild rice (Oryza nivara) chloroplast genome: first genome wide comparative sequence analysis of wild and cultivated rice Gene. ,vol. 340, pp. 133- 139 ,(2004) , 10.1016/J.GENE.2004.06.008
Hui Huang, Chao Shi, Yuan Liu, Shu-Yan Mao, Li-Zhi Gao, Thirteen Camellia chloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationships BMC Evolutionary Biology. ,vol. 14, pp. 151- 151 ,(2014) , 10.1186/1471-2148-14-151
Sai-Chun Tang, Wei-Bin Xu, Fa-Nan Wei, Machilus parapauhoi sp. nov. and a new synonym of Machilus (Lauraceae) from east Asia Nordic Journal of Botany. ,vol. 28, pp. 503- 505 ,(2010) , 10.1111/J.1756-1051.2010.00748.X
V. Goremykin, K. I. Hirsch-Ernst, S. W�lfl, F. H. Hellwig, The chloroplast genome of the “basal” angiosperm Calycanthus fertilis – structural and phylogenetic analyses Plant Systematics and Evolution. ,vol. 242, pp. 119- 135 ,(2003) , 10.1007/S00606-003-0056-4