The complete chloroplast genome sequence of Morus cathayana and Morus multicaulis, and comparative analysis within genus Morus L.

作者: Wei Qing Kong , Jin Hong Yang

DOI: 10.7717/PEERJ.3037

关键词:

摘要: Trees in the Morus genera belong to Moraceae family. To better understand species status of genus and provide information for studies on evolutionary biology within genus, complete chloroplast (cp) genomes M. cathayana multicaulis were sequenced. The plastomes two are 159,265 bp 159,103 bp, respectively, with corresponding 83 82 simple sequence repeats (SSRs). Similar SSRs mongolica indica cp genomes, more than 70% mononucleotides, ten coding regions, one exhibits nucleotide content polymorphism. Results codon usage relative synonymous show a strong bias towards NNA NNT codons genomes. Analysis plot effective number (ENc) five spp. showed that most genes follow standard curve, but several have ENc values below expected curve. results indicate both natural selection mutational contributed bias. Ten highly variable regions identified among 154 single-nucleotide polymorphism mutation events accurately located gene region.

参考文章(46)
Yu Song, Wenpan Dong, Bing Liu, Chao Xu, Xin Yao, Jie Gao, Richard T. Corlett, Comparative analysis of complete chloroplast genome sequences of two tropical trees Machilus yunnanensis and Machilus balansae in the family Lauraceae Frontiers in Plant Science. ,vol. 6, pp. 662- 662 ,(2015) , 10.3389/FPLS.2015.00662
S. K. Gupta, T. K. Bhattacharyya, T. C. Ghosh, Synonymous codon usage in Lactococcus lactis: mutational bias versus translational selection Journal of Biomolecular Structure & Dynamics. ,vol. 21, pp. 527- 535 ,(2004) , 10.1080/07391102.2004.10506946
Wenpan Dong, Han Liu, Chao Xu, Yunjuan Zuo, Zhongjian Chen, Shiliang Zhou, A chloroplast genomic strategy for designing taxon specific DNA mini-barcodes: a case study on ginsengs BMC Genetics. ,vol. 15, pp. 138- 138 ,(2014) , 10.1186/S12863-014-0138-Z
Pär K Ingvarsson, Sarah Ribstein, Douglas R Taylor, Molecular Evolution of Insertions and Deletion in the Chloroplast Genome of Silene Molecular Biology and Evolution. ,vol. 20, pp. 1737- 1740 ,(2003) , 10.1093/MOLBEV/MSG163
Huei-Jiun Su, Saskia A. Hogenhout, Abdullah M. Al-Sadi, Chih-Horng Kuo, Complete chloroplast genome sequence of Omani lime (Citrus aurantiifolia) and comparative analysis within the rosids. PLOS ONE. ,vol. 9, ,(2014) , 10.1371/JOURNAL.PONE.0113049