Construction of a Competitive Endogenous RNA Network for Pancreatic Adenocarcinoma Based on Weighted Gene Co-expression Network Analysis and a Prognosis Model

作者: Jing Wang , Jinzhu Xiang , Xueling Li

DOI: 10.3389/FBIOE.2020.00515

关键词: RNASurvival analysisCompeting endogenous RNAGene co-expression networkGeneBiologyDNA mismatch repairAdenocarcinomaCancer researchPancreatic disease

摘要: Pancreatic adenocarcinoma (PAAD) is a pancreatic disease with considerable mortality worldwide. Because of lack obvious symptoms at the early stage, most PAAD patients are diagnosed terminal stage and prognosis usually poor. In this study, we firstly obtained RNA sequencing data 181 from The Cancer Genome Atlas (TCGA) database to identify diagnostic biomarkers for PAAD. Survival-related mRNAs were identified using weighted gene co-expression network analysis (WGCNA), then linear prognostic model seven long non-coding RNAs (lncRNAs) was established univariate multivariate Cox proportional hazards regression analyses, which verified time-dependent receiver operating characteristic (ROC) curve analysis. Finally, according survival analysis, constructed survival-related competing endogenous (ceRNA) network. Our results showed that: (1) upregulated genes related cell cycle-related pathway (including homologous recombination, DNA replication mismatch repair) in can increase proliferation ability cancer cells; (2) 7-lncRNA signature predict overall (OS) patients; (3) key lncRNAs involved mutual regulation ceRNA

参考文章(69)
Carlos Caldas, Scott E Kern, None, K-ras mutation and pancreatic adenocarcinoma. International Journal of Pancreatology. ,vol. 18, pp. 1- 6 ,(1995) , 10.1007/BF02825415
Xiaohui Yan, Zhongyi Hu, Yi Feng, Xiaowen Hu, Jiao Yuan, Sihai D. Zhao, Youyou Zhang, Lu Yang, Weiwei Shan, Qun He, Lingling Fan, Lana E. Kandalaft, Janos L. Tanyi, Chunsheng Li, Chao-Xing Yuan, Dongmei Zhang, Huiqing Yuan, Keqin Hua, Yiling Lu, Dionyssios Katsaros, Qihong Huang, Kathleen Montone, Yi Fan, George Coukos, Jeff Boyd, Anil K. Sood, Timothy Rebbeck, Gordon B. Mills, Chi V. Dang, Lin Zhang, Comprehensive Genomic Characterization of Long Non-coding RNAs across Human Cancers Cancer Cell. ,vol. 28, pp. 529- 540 ,(2015) , 10.1016/J.CCELL.2015.09.006
Peter Langfelder, Steve Horvath, WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics. ,vol. 9, pp. 559- 559 ,(2008) , 10.1186/1471-2105-9-559
Pengfei Jiang, Deli Zhang, Maternal embryonic leucine zipper kinase (MELK): a novel regulator in cell cycle control, embryonic development, and cancer. International Journal of Molecular Sciences. ,vol. 14, pp. 21551- 21560 ,(2013) , 10.3390/IJMS141121551
Lola Rahib, Benjamin D. Smith, Rhonda Aizenberg, Allison B. Rosenzweig, Julie M. Fleshman, Lynn M. Matrisian, Projecting Cancer Incidence and Deaths to 2030: The Unexpected Burden of Thyroid, Liver, and Pancreas Cancers in the United States Cancer Research. ,vol. 74, pp. 2913- 2921 ,(2014) , 10.1158/0008-5472.CAN-14-0155
Doris Damian, Malka Gorfine, Statistical concerns about the GSEA procedure. Nature Genetics. ,vol. 36, pp. 663- 663 ,(2004) , 10.1038/NG0704-663A
Joan Massagué, G1 cell-cycle control and cancer. Nature. ,vol. 432, pp. 298- 306 ,(2004) , 10.1038/NATURE03094
Jean-Pierre Tassan, Xavier Goff, An overview of the KIN1/PAR-1/MARK kinase family. Biology of the Cell. ,vol. 96, pp. 193- 199 ,(2004) , 10.1016/J.BIOLCEL.2003.10.009
Kemin Wu, Guohuang Hu, Xin He, Peng Zhou, Jian Li, Bin He, Weijia Sun, None, MicroRNA-424-5p Suppresses the Expression of SOCS6 in Pancreatic Cancer Pathology & Oncology Research. ,vol. 19, pp. 739- 748 ,(2013) , 10.1007/S12253-013-9637-X