The evaluation of the rates of biological processes from tracer kinetic data

作者: Arthur L. Koch

DOI: 10.1016/0022-5193(68)90173-2

关键词: IsotopeBiochemistryTurnoverRNAMessenger RNANucleic acidLagNucleotideKineticsChemistryGeneral Biochemistry, Genetics and Molecular BiologyModelling and SimulationStatistics and ProbabilityGeneral Immunology and MicrobiologyApplied mathematicsGeneral Agricultural and Biological SciencesGeneral Medicine

摘要: Abstract Because messenger RNA continuously breaks down to form nucleotides that are reutilized for synthesis of all forms RNA, analysis the kinetics uptake precursors into nucleic acids cells is complicated. Our theoretical work ( Koch, 1962 ) now extended evaluate effects recycling case growing cells. Equations derived several different assumptions about turnover intermediate pool precursors. Even if one assumes infinitesimal, equations apply at times greater than a minute Escherichia coli. The effective rate constant smaller true by factor which ratio molecules enter from exogenous source total sources. initial lag in incorporation isotope can be used measure velocity sources size known. If unknown, it may estimated time extrapolated measurements times. Short times, however, do not necessarily reflect small pool. large and communicate with bypass or external medium but still give rise short because rapid precursor messenger. percentage particular classes acid relative quantity measured. These both amount labile

参考文章(32)
Arthur L. Koch, Biochemical studies of virus reproduction. XI. Acid-soluble purine metabolism. Journal of Biological Chemistry. ,vol. 203, pp. 227- 237 ,(1953) , 10.1016/S0021-9258(19)52634-5
Arthur L. Koch, The adaptive responses of Escherichia coli to a feast and famine existence. Advances in Microbial Physiology. ,vol. 6, pp. 147- 217 ,(1971) , 10.1016/S0065-2911(08)60069-7
James S. Franzen, S.B. Binkley, Comparison of the acid-soluble nucleotides in Escherichia coli at different growth rates. Journal of Biological Chemistry. ,vol. 236, pp. 515- 519 ,(1961) , 10.1016/S0021-9258(18)64395-9
Rusty J. Mans, Arthur L. Koch, Metabolism of Adenosine and Deoxyadenosine by Growing Cultures of Escherichia coli Journal of Biological Chemistry. ,vol. 235, pp. 450- 456 ,(1960) , 10.1016/S0021-9258(18)69545-6
Giokgio Mangiarotti, David Schlessinger, Polyribosome metabolism in Escherichia coli Journal of Molecular Biology. ,vol. 20, pp. 123- 143 ,(1966) , 10.1016/0022-2836(66)90122-7
R M Winslow, R A Lazzarini, Amino acid regulation of the rates of synthesis and chain elongation of ribonucleic acid in Escherichia coli. Journal of Biological Chemistry. ,vol. 244, pp. 3387- 3392 ,(1969) , 10.1016/S0021-9258(18)93137-6
Arthur L. Koch, Evaluation of the rates of biological processes from tracer kinetic data Journal of Theoretical Biology. ,vol. 32, pp. 429- 450 ,(1971) , 10.1016/0022-5193(71)90150-0