Identification of miRNA, lncRNA and mRNA-associated ceRNA networks and potential biomarker for MELAS with mitochondrial DNA A3243G mutation.

作者: Wei Wang , Qianqian Zhuang , Kunqian Ji , Bing Wen , Pengfei Lin

DOI: 10.1038/SREP41639

关键词: Competing endogenous RNAMitochondrial myopathyComputational biologyMitochondrial DNAPolymerase chain reactionmicroRNABiologyMessenger RNATranslation (biology)Lactic acidosis

摘要: Researchers in the field of mitochondrial biology are increasingly unveiling complex mechanisms between dysfunction and noncoding RNAs (ncRNAs). However, roles ncRNAs underlying myopathy remain unexplored. The aim this study was to elucidate regulating networks dysregulated Mitochondrial myopathy, Encephalopathy, Lactic Acidosis, Stroke-like episodes (MELAS) with DNA (mtDNA) A3243G mutation, which might make contributions and, possibly, new tools applicable clinical practice. Through high-throughput technology followed by quantitative real-time polymerase chain reaction (qRT-PCR) bioinformatics analyses, for first time, we found that muscle miRNAs lncRNAs 20 MELAS patients mtDNA mutation controls formed regulation participated immune system, signal transduction, translation, contraction other pathways discovery training phase. Then, selected were validated serum independent validation cohorts qRT-PCR. Finally, ROC curve analysis indicated reduced miR-27b-3p had better diagnosis value than lactate serve as a novel, noninvasive biomarker MELAS. Follow-up investigation is warranted understand pathogenesis.

参考文章(50)
Qi Zhu, Ailing Hong, Nijing Sheng, Xiaolin Zhang, Anna Matejko, Kyu-Yeon Jun, Onnop Srivannavit, Erdogan Gulari, Xiaolian Gao, Xiaochuan Zhou, μParaflo™ Biochip for Nucleic Acid and Protein Analysis Methods of Molecular Biology. ,vol. 382, pp. 287- 312 ,(2007) , 10.1007/978-1-59745-304-2_19
Sudha Bucha, Debashis Mukhopadhyay, Nitai Pada Bhattacharyya, Regulation of mitochondrial morphology and cell cycle by microRNA-214 targeting Mitofusin2. Biochemical and Biophysical Research Communications. ,vol. 465, pp. 797- 802 ,(2015) , 10.1016/J.BBRC.2015.08.090
Gráinne S Gorman, Andrew M Schaefer, Yi Ng, Nicholas Gomez, Emma L Blakely, Charlotte L Alston, Catherine Feeney, Rita Horvath, Patrick Yu‐Wai‐Man, Patrick F Chinnery, Robert W Taylor, Douglass M Turnbull, Robert McFarland, None, Prevalence of nuclear and mitochondrial DNA mutations related to adult mitochondrial disease. Annals of Neurology. ,vol. 77, pp. 753- 759 ,(2015) , 10.1002/ANA.24362
Xihong Zhou, Shengnan Zuo, Wu Xin, miR-27b overexpression improves mitochondrial function in a Sirt1-dependent manner Journal of Physiology and Biochemistry. ,vol. 71, pp. 753- 762 ,(2015) , 10.1007/S13105-015-0439-3
Philipp G. Maass, Friedrich C. Luft, Sylvia Bähring, Long non-coding RNA in health and disease Journal of Molecular Medicine. ,vol. 92, pp. 337- 346 ,(2014) , 10.1007/S00109-014-1131-8
Ashuthosh Dharap, Kellie Bowen, Robert Place, Long-Cheng Li, Raghu Vemuganti, Transient focal ischemia induces extensive temporal changes in rat cerebral MicroRNAome Journal of Cerebral Blood Flow and Metabolism. ,vol. 29, pp. 675- 687 ,(2009) , 10.1038/JCBFM.2008.157
Susana Kalko, Sonia Paco, Cristina Jou, Maria Rodríguez, Marija Meznaric, Mihael Rogac, Maja Jekovec-Vrhovsek, Monica Sciacco, Maurizio Moggio, Gigliola Fagiolari, Boel De Paepe, Linda De Meirleir, Isidre Ferrer, Manel Roig-Quilis, Francina Munell, Julio Montoya, Ester López-Gallardo, Eduardo Ruiz-Pesini, Rafael Artuch, Raquel Montero, Ferran Torner, Andres Nascimento, Carlos Ortez, Jaume Colomer, Cecilia Jimenez-Mallebrera, Transcriptomic profiling of TK2 deficient human skeletal muscle suggests a role for the p53 signalling pathway and identifies growth and differentiation factor-15 as a potential novel biomarker for mitochondrial myopathies BMC Genomics. ,vol. 15, pp. 91- 91 ,(2014) , 10.1186/1471-2164-15-91
Wang-Xia Wang, Nishant P. Visavadiya, Jignesh D. Pandya, Peter T. Nelson, Patrick G. Sullivan, Joe E. Springer, Mitochondria-Associated MicroRNAs in Rat Hippocampus Following Traumatic Brain Injury Experimental Neurology. ,vol. 265, pp. 84- 93 ,(2015) , 10.1016/J.EXPNEUROL.2014.12.018