Identification of reference genes for gene expression normalization in safflower (Carthamus tinctorius)

作者: Fei Liu , Dan Dan Guo , Yan Hua Tu , Ying Ru Xue , Yue Gao

DOI: 10.1016/J.BJP.2016.05.006

关键词: Housekeeping geneGeneticsGene expressionReference genesEukaryotic translation elongation factor 1 alpha 1BiologyGeneCarthamusReal-time polymerase chain reactionCandidate gene

摘要: Safflower (Carthamus tinctorius L., Asteraceae) is an important oil crop and medicinal plant. Gene expression analysis gaining importance in the research of safflower. Quantitative PCR has become a powerful method for gene study. Reference genes are one major qualification requirements qPCR because they can reduce variability. To identify reference safflower, nine candidate housekeeping were selected from EST library safflower constructed by our lab: CtACT (actin), CtGAPDH (glyceraldehyde 3-phosphate dehydrogenase), CtE1F4A (elongation factor 1 alpha), CtTUA (alpha-tubulin), CtTUB (beta-tubulin), CtPP2A (serine/threonine-protein phosphatase), (eukaryotic initiation 4A), CtUBI (Ubiquitin), Ct60S (60S acidic ribosomal protein). Expression stability was examined across 54 samples, representing tissues at different flowering stages two chemotype lines. We assessed these employing four algorithms (geNorm, NormFinder, ΔCt approach, BestKeeper) found that highly ranked genes. used as to evaluate CtFAD2-10 CtKASII. Our data suggest could be internal controls normalize

参考文章(51)
Oyvind M. Andersen, Kenneth R. Markham, FLAVONOIDS: Chemistry, Biochemistry and Applications ,(2018)
Amy M Brunner, Igor A Yakovlev, Steven H Strauss, Validating internal controls for quantitative plant gene expression studies BMC Plant Biology. ,vol. 4, pp. 14- 14 ,(2004) , 10.1186/1471-2229-4-14
Jo Vandesompele, Katleen De Preter, Filip Pattyn, Bruce Poppe, Nadine Van Roy, Anne De Paepe, Frank Speleman, Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes Genome Biology. ,vol. 3, pp. 1- 12 ,(2002) , 10.1186/GB-2002-3-7-RESEARCH0034
Sa Peng, Na Feng, Meili Guo, Yuehua Chen, Qinghua Guo, None, Genetic variation of Carthamus tinctorius L. and related species revealed by SRAP analysis Biochemical Systematics and Ecology. ,vol. 36, pp. 531- 538 ,(2008) , 10.1016/J.BSE.2008.03.010
Pooran Golkar, Ahmad Arzani, Abdolmajid M. Rezaei, Genetic variation in safflower (Carthamus tinctorious L.) for seed quality-related traits and inter-simple sequence repeat (ISSR) markers. International Journal of Molecular Sciences. ,vol. 12, pp. 2664- 2677 ,(2011) , 10.3390/IJMS12042664
Mukesh Jain, Aashima Nijhawan, Akhilesh K. Tyagi, Jitendra P. Khurana, Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR Biochemical and Biophysical Research Communications. ,vol. 345, pp. 646- 651 ,(2006) , 10.1016/J.BBRC.2006.04.140
Umit Gecgel, Mehmet Demirci, Enver Esendal, Murat Tasan, Fatty Acid Composition of the Oil from Developing Seeds of Different Varieties of Safflower (Carthamus tinctorius L.) Journal of the American Oil Chemists' Society. ,vol. 84, pp. 47- 54 ,(2007) , 10.1007/S11746-006-1007-3
Hongjian Wan, Wei Yuan, Meiying Ruan, Qingjing Ye, Rongqing Wang, Zhimiao Li, Guozhi Zhou, Zhuping Yao, Jing Zhao, Shujun Liu, Yuejian Yang, Identification of reference genes for reverse transcription quantitative real-time PCR normalization in pepper (Capsicum annuum L.) Biochemical and Biophysical Research Communications. ,vol. 416, pp. 24- 30 ,(2011) , 10.1016/J.BBRC.2011.10.105
Chaoyun Wang, Qingxian Huang, Chunhua Wang, Xiaoxi Zhu, Yunfeng Duan, Shuai Yuan, Xianyong Bai, Hydroxysafflor yellow A suppress oleic acid-induced acute lung injury via protein kinase A Toxicology and Applied Pharmacology. ,vol. 272, pp. 895- 904 ,(2013) , 10.1016/J.TAAP.2013.07.021
Yakui Li, Zhangjian Wang, Hong Chang, Yan Wang, Meili Guo, Expression of CT-wpr, screened by cDNA-AFLP approach, associated with hydroxysafflor yellow A in Carthamus tinctorius L. Biochemical Systematics and Ecology. ,vol. 38, pp. 1148- 1155 ,(2010) , 10.1016/J.BSE.2010.10.010