Compound identification in gas chromatography/mass spectrometry-based metabolomics by blind source separation.

作者: Xavier Domingo-Almenara , Alexandre Perera , Noelia Ramírez , Nicolau Cañellas , Xavier Correig

DOI: 10.1016/J.CHROMA.2015.07.044

关键词: OutlierLinear combinationAnalytical chemistryMultivariate statisticsIndependent component analysisPattern recognitionDeconvolutionPrincipal component analysisChromatographyLeast squaresChemistryArtificial intelligenceBlind signal separation

摘要: Abstract Metabolomics GC–MS samples involve high complexity data that must be effectively resolved to produce chemically meaningful results. Multivariate curve resolution-alternating least squares (MCR-ALS) is the most frequently reported technique for purpose. More recently, independent component analysis (ICA) has been as an alternative MCR. Those algorithms attempt infer a model describing observed and, therefore, regression used in MCR assumes linear combination of model. However, due real data, construction describe optimally critical step and these should prevent influence from outlier data. This study proves (ICR) compound identification. Both ICR though require correctly resolve mixtures. In this paper, novel orthogonal signal deconvolution (OSD) approach introduced, which uses principal determine spectra. The includes identification comparison between results by ICA-OSD, MCR-OSD, MCR-ALS using pure standards human serum samples. Results shows may multivariate methods, efficiency comparable MCR-ALS. Also, demonstrates proposed OSD achieves greater spectral resolution accuracy than traditional when compounds elute under undue interference biological matrices.

参考文章(30)
Guoqing Wang, Qingzhu Ding, Yu’an Sun, Linghao He, Xiaoli Sun, Estimation of source infrared spectra profiles of acetylspiramycin active components from troches using kernel independent component analysis Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy. ,vol. 70, pp. 571- 576 ,(2008) , 10.1016/J.SAA.2007.07.051
D.N. Rutledge, D. Jouan-Rimbaud Bouveresse, Independent Components Analysis with the JADE algorithm Trends in Analytical Chemistry. ,vol. 50, pp. 22- 32 ,(2013) , 10.1016/J.TRAC.2013.03.013
Xueguang Shao, Zhichao Liu, Wensheng Cai, Resolving multi-component overlapping GC-MS signals by immune algorithms Trends in Analytical Chemistry. ,vol. 28, pp. 1312- 1321 ,(2009) , 10.1016/J.TRAC.2009.08.003
Gary J. Patti, Oscar Yanes, Gary Siuzdak, Innovation: Metabolomics: the apogee of the omics trilogy Nature Reviews Molecular Cell Biology. ,vol. 13, pp. 263- 269 ,(2012) , 10.1038/NRM3314
Ichrak Toumi, Stefano Caldarelli, Bruno Torrésani, A review of blind source separation in NMR spectroscopy Progress in Nuclear Magnetic Resonance Spectroscopy. ,vol. 81, pp. 37- 64 ,(2014) , 10.1016/J.PNMRS.2014.06.002
Guoqing Wang, Qingzhu Ding, Zhenyu Hou, Independent component analysis and its applications in signal processing for analytical chemistry Trends in Analytical Chemistry. ,vol. 27, pp. 368- 376 ,(2008) , 10.1016/J.TRAC.2008.01.009
Anna de Juan, Joaquim Jaumot, Romà Tauler, Multivariate Curve Resolution (MCR). Solving the mixture analysis problem Analytical Methods. ,vol. 6, pp. 4964- 4976 ,(2014) , 10.1039/C4AY00571F
Warwick B Dunn, , David Broadhurst, Paul Begley, Eva Zelena, Sue Francis-McIntyre, Nadine Anderson, Marie Brown, Joshau D Knowles, Antony Halsall, John N Haselden, Andrew W Nicholls, Ian D Wilson, Douglas B Kell, Royston Goodacre, Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry Nature Protocols. ,vol. 6, pp. 1060- 1083 ,(2011) , 10.1038/NPROT.2011.335