RNA-Seq and differential gene expression analysis in Temora stylifera copepod females with contrasting non-feeding nauplii survival rates: an environmental transcriptomics study

作者: Ennio Russo , Chiara Lauritano , Giuliana d’Ippolito , Angelo Fontana , Diana Sarno

DOI: 10.1186/S12864-020-07112-W

关键词: BiologyGeneTranscriptomeGeneticsProtein ubiquitinationRNA-SeqCopepodDNA microarrayGene expressionDe novo transcriptome assembly

摘要: … (Mob1b) showed an opposite trend in comparison to RNA-Seq results. In general, log 2 -fold … was larger in the RNA-Seq output than RT-qPCR results. In particular, RNA-Seq log 2 -fold-…

参考文章(139)
Wouter Hazenbos, Irmgard Förster, Björn Clausen, Junji Takeda, Taroh Kinoshita, Inflammatory defects caused by GPI-anchor deficiency in macrophages Paroxysmal Nocturnal Hemoglobinuria and Related Disorders. pp. 247- 249 ,(2003) , 10.1007/978-4-431-67867-0_25
Strzezek J, Fraser L, Kordan W, Functions of platelet activating factor (PAF) in mammalian reproductive processes: a review. Polish Journal of Veterinary Sciences. ,vol. 6, pp. 55- 60 ,(2003)
Stephane Angers, Chris J. Thorpe, Travis L. Biechele, Seth J. Goldenberg, Ning Zheng, Michael J. MacCoss, Randall T. Moon, The KLHL12-Cullin-3 ubiquitin ligase negatively regulates the Wnt-β-catenin pathway by targeting Dishevelled for degradation Nature Cell Biology. ,vol. 8, pp. 348- 357 ,(2006) , 10.1038/NCB1381
Rumela Chakrabarti, Sally Shepardson, Moumita Karmakar, Richard Trdan, Jennifer Walker, Ramdas Shandilya, Don Stewart, Srinivasan Vijayaraghavan, Walter Hoeh, Extra-mitochondrial localization and likely reproductive function of a female-transmitted cytochrome c oxidase subunit II protein. Development Growth & Differentiation. ,vol. 51, pp. 511- 519 ,(2009) , 10.1111/J.1440-169X.2009.01113.X
Larry W. Tjoelker, Cheryl L. Wilder, Christine D. Eberhardt, Lawrence S. Cousens, Hai Le Trong, Patrick Gray, Platelet-activating factor acetylhydrolase ,(1994)
Andreas Schroeder, Odilo Mueller, Susanne Stocker, Ruediger Salowsky, Michael Leiber, Marcus Gassmann, Samar Lightfoot, Wolfram Menzel, Martin Granzow, Thomas Ragg, The RIN: an RNA integrity number for assigning integrity values to RNA measurements BMC Molecular Biology. ,vol. 7, pp. 3- 3 ,(2006) , 10.1186/1471-2199-7-3
H. Biessmann, Q. K. Nguyen, D. Le, M. F. Walter, Microarray-based survey of a subset of putative olfactory genes in the mosquito Anopheles gambiae. Insect Molecular Biology. ,vol. 14, pp. 575- 589 ,(2005) , 10.1111/J.1365-2583.2005.00590.X
SA Poulet, T Wichard, JB Ledoux, B Lebreton, J Marchetti, C Dancie, D Bonnet, A Cueff, P Morin, G Pohnert, Influence of diatoms on copepod reproduction. I. Field and laboratory observations related to Calanus helgolandicus egg production Marine Ecology Progress Series. ,vol. 308, pp. 129- 142 ,(2006) , 10.3354/MEPS308129
Giuliana d'Ippolito, Giovanna Romano, Olimpia Iadicicco, Antonio Miralto, Adrianna Ianora, Guido Cimino, Angelo Fontana, New birth-control aldehydes from the marine diatom Skeletonema costatum: characterization and biogenesis Tetrahedron Letters. ,vol. 43, pp. 6133- 6136 ,(2002) , 10.1016/S0040-4039(02)01285-6
A. Barreiro, Y. Carotenuto, N. Lamari, F. Esposito, G. D'Ippolito, A. Fontana, G. Romano, A. Ianora, A. Miralto, C. Guisande, Diatom induction of reproductive failure in copepods: The effect of PUAs versus non volatile oxylipins Journal of Experimental Marine Biology and Ecology. ,vol. 401, pp. 13- 19 ,(2011) , 10.1016/J.JEMBE.2011.03.007