Mapping the genome landscape using tiling array technology

作者: Junshi Yazaki , Brian D. Gregory , Joseph R. Ecker

DOI: 10.1016/J.PBI.2007.07.006

关键词: GeneticsEpigeneticsEpigenomicsRNA-Directed DNA MethylationDNA methylationIllumina Methylation AssayTiling arrayComputational biologyENCODEBiologyGenome

摘要: … To do this, these groups used an antibody that specifically recognized methylated cytosine bases within genomic DNA. Therefore, a few hundred base pairs surrounding each region of …

参考文章(77)
John Castle, Phil Garrett-Engele, Christopher D Armour, Sven J Duenwald, Patrick M Loerch, Michael R Meyer, Eric E Schadt, Roland Stoughton, Mark L Parrish, Daniel D Shoemaker, Jason M Johnson, Optimization of oligonucleotide arrays and RNA amplification protocols for analysis of transcript structure and alternative splicing Genome Biology. ,vol. 4, pp. 1- 13 ,(2003) , 10.1186/GB-2003-4-10-R66
Timothy R Hughes, Tomas Babak, Benjamin J Blencowe, A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription BMC Genomics. ,vol. 6, pp. 104- 104 ,(2005) , 10.1186/1471-2164-6-104
Joseph A. Martens, Lisa Laprade, Fred Winston, Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene Nature. ,vol. 429, pp. 571- 574 ,(2004) , 10.1038/NATURE02538
Bradley E. Bernstein, Tarjei S. Mikkelsen, Xiaohui Xie, Michael Kamal, Dana J. Huebert, James Cuff, Ben Fry, Alex Meissner, Marius Wernig, Kathrin Plath, Rudolf Jaenisch, Alexandre Wagschal, Robert Feil, Stuart L. Schreiber, Eric S. Lander, A Bivalent Chromatin Structure Marks Key Developmental Genes in Embryonic Stem Cells Cell. ,vol. 125, pp. 315- 326 ,(2006) , 10.1016/J.CELL.2006.02.041
M. Schena, D. Shalon, R. W. Davis, P. O. Brown, Quantitative Monitoring of Gene Expression Patterns with a Complementary DNA Microarray Science. ,vol. 270, pp. 467- 470 ,(1995) , 10.1126/SCIENCE.270.5235.467
Robert K. Tran, Jorja G. Henikoff, Daniel Zilberman, Renata F. Ditt, Steven E. Jacobsen, Steven Henikoff, DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Current Biology. ,vol. 15, pp. 154- 159 ,(2005) , 10.1016/J.CUB.2005.01.008
Mary Gehring, Steven Henikoff, DNA methylation dynamics in plant genomes. Biochimica et Biophysica Acta. ,vol. 1769, pp. 276- 286 ,(2007) , 10.1016/J.BBAEXP.2007.01.009
T. Hohn, S. Corsten, S. Rieke, M. Muller, H. Rothnie, Methylation of coding region alone inhibits gene expression in plant protoplasts. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 93, pp. 8334- 8339 ,(1996) , 10.1073/PNAS.93.16.8334