Temporal analysis of reassortment and molecular evolution of Cucumber mosaic virus: Extra clues from its segmented genome
作者： Kazusato Ohshima , Kosuke Matsumoto , Ryosuke Yasaka , Mai Nishiyama , Kenta Soejima
DOI: 10.1016/J.VIROL.2015.09.024
关键词: Phylogenetics 、 Biology 、 Molecular evolution 、 Reassortment 、 Population 、 Reassortant Viruses 、 Lineage (evolution) 、 Cucumber mosaic virus 、 Virology 、 Evolutionary biology 、 Cucumovirus
摘要: Cucumber mosaic virus (CMV) is a damaging pathogen of over 200 mono- and dicotyledonous crop species worldwide. It has the broadest known host range any virus, but timescale its evolution unknown. To investigate evolutionary history this we obtained genomic sequences 40 CMV isolates from brassicas sampled in Iran, Turkey Japan, combined them with published sequences. Our synonymous ('silent') site analyses revealed that present population progeny single ancestor existing 1550-2600 years ago, mostly radiated 295-545 ago. We found major lineages are not phylogeographically confined, recombination reassortment restricted to local populations no reassortant lineage more than 251 old. results highlight different patterns seen among viral pathogens brassica crops across world.
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Mireille Jacquemond, Cucumber mosaic virus. Advances in Virus Research. ,vol. 84, pp. 439- 504 ,(2012) , 10.1016/B978-0-12-394314-9.00013-0
T A Hall, BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT Nucleic Acids Symposium Series. ,vol. 41, pp. 95- 98 ,(1999) , 10.14601/PHYTOPATHOL_MEDITERR-14998U1.29
Diego Darriba, Guillermo L Taboada, Ramón Doallo, David Posada, jModelTest 2: more models, new heuristics and parallel computing Nature Methods. ,vol. 9, pp. 772- 772 ,(2012) , 10.1038/NMETH.2109
M. F. Clark, A. N. Adams, Characteristics of the microplate method of enzyme-linked immunosorbent assay for the detection of plant viruses. Journal of General Virology. ,vol. 34, pp. 475- 483 ,(1977) , 10.1099/0022-1317-34-3-475
D. Posada, K. A. Crandall, Evaluation of methods for detecting recombination from DNA sequences: Computer simulations Proceedings of the National Academy of Sciences of the United States of America. ,vol. 98, pp. 13757- 13762 ,(2001) , 10.1073/PNAS.241370698
Marilyn J. Roossinck, Evolutionary History of Cucumber Mosaic Virus Deduced by Phylogenetic Analyses Journal of Virology. ,vol. 76, pp. 3382- 3387 ,(2002) , 10.1128/JVI.76.7.3382-3387.2002
Nancy A Gerloff, Salah Uddin Khan, Amanda Balish, Ireen S Shanta, Natosha Simpson, LaShondra Berman, Najmul Haider, Mee Kian Poh, Ausraful Islam, Emily Gurley, Md Abdul Hasnat, T Dey, Bo Shu, Shannon Emery, Stephen Lindstrom, Ainul Haque, Alexander Klimov, Julie Villanueva, Mahmudur Rahman, Eduardo Azziz-Baumgartner, Md Ziaur Rahman, Stephen P Luby, Nord Zeidner, Ruben O Donis, Katharine Sturm-Ramirez, C Todd Davis, None, Multiple reassortment events among highly pathogenic avian influenza A(H5N1) viruses detected in Bangladesh Virology. pp. 297- 307 ,(2014) , 10.1016/J.VIROL.2013.12.023
Arong Luo, Huijie Qiao, Yanzhou Zhang, Weifeng Shi, Simon YW Ho, Weijun Xu, Aibing Zhang, Chaodong Zhu, Performance of criteria for selecting evolutionary models in phylogenetics: a comprehensive study based on simulated datasets BMC Evolutionary Biology. ,vol. 10, pp. 242- 242 ,(2010) , 10.1186/1471-2148-10-242
MIKA O. SALMINEN, JEAN K. CARR, DONALD S. BURKE, FRANCINE E. McCUTCHAN, Identification of Breakpoints in Intergenotypic Recombinants of HIV Type 1 by Bootscanning AIDS Research and Human Retroviruses. ,vol. 11, pp. 1423- 1425 ,(1995) , 10.1089/AID.1995.11.1423
Peter Bellwood, Clive Gamble, Steven A. Le Blanc, Mark Pluciennik, Martin Richards, John Edward Terrell, First Farmers: The Origins of Agricultural Societies Cambridge Archaeological Journal. ,vol. 17, pp. 87- 109 ,(2007) , 10.1017/S0959774307000078