Investigation into the effects of an individual amino acid on protein function by means of a resonant recognition model

作者: Charalambos Chrysostomou , Huseyin Seker , Nizamettin Aydin

DOI: 10.1007/978-3-642-24082-9_28

关键词: GeneComputational biologyProtein functionInfluenza A virusAmino acidNeuraminidaseInfluenza A virus subtype H5N1Protein familyRobustness (evolution)Computer science

摘要: Upon identification of a new protein it is important to single out these amino acids responsible for the structural classification as well contributing protein's specific biological characterisation. A novel approach presented identify and quantify this cause effect relationship between acid protein. This exploits Common Frequency Peak (CFP) that extracts from Resonant Recognition Model (RRM). Applicability robustness method are shown on case study where five different families influenza virus Neuraminidase (NA) genes studied. They include H1N1, H1N2, H2N2, H3N2 H5N1. The analyses identified segments, namely three H1N1 H5N1 two H2N2 suggested they play key role in Influenza NA gene functionality can potentially be considered target areas future antiviral drugs vaccines such neuraminidase inhibitors.

参考文章(12)
Yiming Bao, Pavel Bolotov, Dmitry Dernovoy, Boris Kiryutin, Leonid Zaslavsky, Tatiana Tatusova, Jim Ostell, David Lipman, The influenza virus resource at the National Center for Biotechnology Information. Journal of Virology. ,vol. 82, pp. 596- 601 ,(2008) , 10.1128/JVI.02005-07
David M. Morens, Jeffery K. Taubenberger, Anthony S. Fauci, The Persistent Legacy of the 1918 Influenza Virus The New England Journal of Medicine. ,vol. 361, pp. 225- 229 ,(2009) , 10.1056/NEJMP0904819
S. Kawashima, H. Ogata, M. Kanehisa, AAindex: Amino Acid Index Database Nucleic Acids Research. ,vol. 27, pp. 368- 369 ,(1999) , 10.1093/NAR/27.1.368
V. Veljkovic, N. Veljkovic, J. Este, A. Huther, U. Dietrich, Application Of The EIIP/ISM Bioinformatics Concept in Development of New Drugs Current Medicinal Chemistry. ,vol. 14, pp. 441- 453 ,(2007) , 10.2174/092986707779941014
S Altschula, Warren Gisha, Webb Millerb, E Meyersc, D Lipmana, None, Basic Local Alignment Search Tool Journal of Molecular Biology. ,vol. 215, pp. 403- 410 ,(1990) , 10.1016/S0022-2836(05)80360-2
V. Veljkovic, I. Cosic, Dimitrijevic, D. Lalovic, Is it Possible to Analyze DNA and Protein Sequences by the Methods of Digital Signal Processing? IEEE Transactions on Biomedical Engineering. ,vol. BME-32, pp. 337- 341 ,(1985) , 10.1109/TBME.1985.325549
Anne Moscona, Neuraminidase Inhibitors for Influenza New England Journal of Medicine. ,vol. 353, pp. 1363- 1373 ,(2005) , 10.1056/NEJMRA050740
I. Cosic, Macromolecular bioactivity: is it resonant interaction between macromolecules?-theory and applications IEEE Transactions on Biomedical Engineering. ,vol. 41, pp. 1101- 1114 ,(1994) , 10.1109/10.335859
Veljko Veljkovic, Nevena Veljkovic, Claude P Muller, Sybille Müller, Sanja Glisic, Vladimir Perovic, Heinz Köhler, Characterization of conserved properties of hemagglutinin of H5N1 and human influenza viruses: possible consequences for therapy and infection control BMC Structural Biology. ,vol. 9, pp. 21- 21 ,(2009) , 10.1186/1472-6807-9-21