Recurrence, submicroscopic complexity, and potential clinical relevance of copy gains detected by array CGH that are shown to be unbalanced insertions by FISH

作者: N. J. Neill , B. C. Ballif , A. N. Lamb , S. Parikh , J. B. Ravnan

DOI: 10.1101/GR.114579.110

关键词: GeneGeneticsComparative genomic hybridizationChromosome BreakpointsBiologyChromosomeGene duplicationRett syndromeXq28MECP2

摘要: Insertions occur when a segment of one chromosome is translocated and inserted into new region the same or non-homologous chromosome. We report 71 cases with unbalanced insertions identified using array CGH FISH in 4909 referred to our laboratory for found have copy-number abnormalities. Although majority were non-recurrent, several recurrent detected, including three der(Y)ins(Y;18)(q?11.2;p11.32p11.32)pat inherited from parents carrying an insertion. The clinical significance these rearrangements unclear, although small size, limited gene content, inheritance pattern each suggests that phenotypic consequences may be benign. Cryptic, submicroscopic duplications observed at near insertion sites two patients, further confounding interpretation insertions. Using FISH, linear amplification, CGH, we 126-kb duplicated 19p13.3 MECP2 Xq28 patient symptoms Rett syndrome. Our results demonstrate most non-recurrent unclear without high-resolution site characterization, potential otherwise benign duplication result clinically relevant outcome through disruption necessitates use determine whether gains detected by represent tandem Further follow-up testing techniques such as amplification sequencing should used involvement after has presence

参考文章(29)
Lawrence T. Reiter, Philip J. Hastings, Eva Nelis, Peter De Jonghe, Christine Van Broeckhoven, James R. Lupski, Human meiotic recombination products revealed by sequencing a hotspot for homologous strand exchange in multiple HNPP deletion patients. American Journal of Human Genetics. ,vol. 62, pp. 1023- 1033 ,(1998) , 10.1086/301827
BC Ballif, A Theisen, DM McDonald-McGinn, EH Zackai, JH Hersh, BA Bejjani, LG Shaffer, Identification of a previously unrecognized microdeletion syndrome of 16q11.2q12.2. Clinical Genetics. ,vol. 74, pp. 469- 475 ,(2008) , 10.1111/J.1399-0004.2008.01094.X
Dianne N. Abuelo, Gail Barsel-Bowers, Anne Richardson, John M. Opitz, James F. Reynolds, Insertional translocations: report of two new families and review of the literature. American Journal of Medical Genetics. ,vol. 31, pp. 319- 329 ,(1988) , 10.1002/AJMG.1320310209
N. Simon Thomas, John F. Harvey, David J. Bunyan, Julia Rankin, Giedre Grigelioniene, Damien L. Bruno, Tiong Y. Tan, Susan Tomkins, Robert Hastings, Clinical and molecular characterization of duplications encompassing the human SHOX gene reveal a variable effect on stature American Journal of Medical Genetics Part A. ,vol. 149, pp. 1407- 1414 ,(2009) , 10.1002/AJMG.A.32914
Alessandra Renieri, Ilaria Meloni, Ilaria Longo, Francesca Ariani, Francesca Mari, Chiara Pescucci, Franca Cambi, Rett syndrome: the complex nature of a monogenic disease. Journal of Molecular Medicine. ,vol. 81, pp. 346- 354 ,(2003) , 10.1007/S00109-003-0444-9
Blake C Ballif, Aaron Theisen, Justine Coppinger, Gordon C Gowans, Joseph H Hersh, Suneeta Madan-Khetarpal, Karen R Schmidt, Raymond Tervo, Luis F Escobar, Christopher A Friedrich, Marie McDonald, Lindsey Campbell, Jeffrey E Ming, Elaine H Zackai, Bassem A Bejjani, Lisa G Shaffer, Expanding the clinical phenotype of the 3q29 microdeletion syndrome and characterization of the reciprocal microduplication. Molecular Cytogenetics. ,vol. 1, pp. 8- 8 ,(2008) , 10.1186/1755-8166-1-8
T. M. Karafet, F. L. Mendez, M. B. Meilerman, P. A. Underhill, S. L. Zegura, M. F. Hammer, New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree Genome Research. ,vol. 18, pp. 830- 838 ,(2008) , 10.1101/GR.7172008
Mark A. Jobling, Chris Tyler-Smith, Fathers and sons: the Y chromosome and human evolution Trends in Genetics. ,vol. 11, pp. 449- 456 ,(1995) , 10.1016/S0168-9525(00)89144-1
Ryan N Traylor, Zheng Fan, Beth Hudson, Jill A Rosenfeld, Lisa G Shaffer, Beth S Torchia, Blake C Ballif, Microdeletion of 6q16.1 encompassing EPHA7 in a child with mild neurological abnormalities and dysmorphic features: case report Molecular Cytogenetics. ,vol. 2, pp. 17- 17 ,(2009) , 10.1186/1755-8166-2-17