The Effect of Limited Diffusion and Wet–Dry Cycling on Reversible Polymerization Reactions: Implications for Prebiotic Synthesis of Nucleic Acids

作者: Paul Higgs

DOI: 10.3390/LIFE6020024

关键词: Chemical engineeringCondensation reactionDiffusionPolymerizationBiochemistryPhase (matter)PolymerMonomerMoleculeChemistryAqueous solution

摘要: A long-standing problem for the origins of life is that polymerization many biopolymers, including nucleic acids and peptides, thermodynamically unfavourable in aqueous solution. If bond making breaking reversible, monomers very short oligomers predominate. Recent experiments have shown wetting drying cycles can overcome this drive formation longer polymers. In dry phase, favourable, but diffusion restricted, bonds only form between are initially close together. wet some hydrolyzed. However, repositioning molecules allows new to next leading an increase mean polymer length. Here, we consider a simple theoretical model explains effect cycling. There equilibrium length distribution with high could be achieved if occurred freely phase. This inaccessible without diffusion. single cycle leads lengths much shorter than this. Repeated cycling significant relative cycle. most favourable case, same as would free were possible These results support RNA World scenario by explaining potential route synthesis long RNAs; however, they also imply beneficial other kinds polymers, where involves condensation reaction.

参考文章(36)
Yingfu Li, Ronald R. Breaker, Kinetics of RNA Degradation by Specific Base Catalysis of Transesterification Involving the 2‘-Hydroxyl Group Journal of the American Chemical Society. ,vol. 121, pp. 5364- 5372 ,(1999) , 10.1021/JA990592P
Wenhua Huang, James P. Ferris, One-Step, Regioselective Synthesis of up to 50-mers of RNA Oligomers by Montmorillonite Catalysis Journal of the American Chemical Society. ,vol. 128, pp. 8914- 8919 ,(2006) , 10.1021/JA061782K
Sudha Rajamani, Alexander Vlassov, Seico Benner, Amy Coombs, Felix Olasagasti, David Deamer, Lipid-assisted Synthesis of RNA-like Polymers from Mononucleotides Origins of Life and Evolution of Biospheres. ,vol. 38, pp. 57- 74 ,(2008) , 10.1007/S11084-007-9113-2
Paul G. Higgs, Niles Lehman, The RNA World: molecular cooperation at the origins of life Nature Reviews Genetics. ,vol. 16, pp. 7- 17 ,(2015) , 10.1038/NRG3841
Pierre-Alain Monnard, Anastassia Kanavarioti, David W. Deamer, Eutectic phase polymerization of activated ribonucleotide mixtures yields quasi-equimolar incorporation of purine and pyrimidine nucleobases. Journal of the American Chemical Society. ,vol. 125, pp. 13734- 13740 ,(2003) , 10.1021/JA036465H
Péter Szabó, István Scheuring, Tamás Czárán, Eörs Szathmáry, None, In silico simulations reveal that replicators with limited dispersal evolve towards higher efficiency and fidelity Nature. ,vol. 420, pp. 340- 343 ,(2002) , 10.1038/NATURE01187
Meng Wu, Paul G. Higgs, Origin of self-replicating biopolymers: autocatalytic feedback can jump-start the RNA world. Journal of Molecular Evolution. ,vol. 69, pp. 541- 554 ,(2009) , 10.1007/S00239-009-9276-8
Felix Olasagasti, Hyunsung John Kim, Nader Pourmand, David W. Deamer, Non-enzymatic transfer of sequence information under plausible prebiotic conditions Biochimie. ,vol. 93, pp. 556- 561 ,(2011) , 10.1016/J.BIOCHI.2010.11.012