CDART: Protein Homology by Domain Architecture
作者： Lewis Y Geer , Michael Domrachev , David J Lipman , Stephen H Bryant
DOI: 10.1101/GR.278202
关键词: Biology 、 Protein function prediction 、 Genetics 、 Protein structure database 、 Conserved Domain Database 、 Computational biology 、 Architecture domain 、 Simple Modular Architecture Research Tool 、 Hypothetical protein 、 Structural Classification of Proteins database 、 Protein domain
摘要: … Although the number of proteins discovered grows at increasingly higher rates, the number of … Proteins are extracted from the NCBI nonredundant protein database (nr). RPS-BLAST is …
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genome.org参考文章(10)
Peer Bork, Kay Hofmann, Philipp Bucher, Andrew F. Neuwald, Stephen F. Altschul, Eugene V. Koonin, A superfamily of conserved domains in DNA damage-responsive cell cycle checkpoint proteins. The FASEB Journal. ,vol. 11, pp. 68- 76 ,(1997) , 10.1096/FASEBJ.11.1.9034168
Shuji Hanai, Masahiro Uchida, Satoru Kobayashi, Masanao Miwa, Kazuhiko Uchida, Genomic organization of Drosophila poly(ADP-ribose) polymerase and distribution of its mRNA during development. Journal of Biological Chemistry. ,vol. 273, pp. 11881- 11886 ,(1998) , 10.1074/JBC.273.19.11881
A. Bairoch, R. Apweiler, The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999. Nucleic Acids Research. ,vol. 27, pp. 49- 54 ,(1998) , 10.1093/NAR/27.1.49
David L Wheeler, Deanna M Church, Ron Edgar, Scott Federhen, Wolfgang Helmberg, Thomas L Madden, Joan U Pontius, Gregory D Schuler, Lynn M Schriml, Edwin Sequeira, Tugba O Suzek, Tatiana A Tatusova, Lukas Wagner, None, Database resources of the National Center for Biotechnology Information: update Nucleic Acids Research. ,vol. 32, pp. 35D- 40 ,(2004) , 10.1093/NAR/GKH073
Marco Punta, Penny C Coggill, Ruth Y Eberhardt, Jaina Mistry, John Tate, Chris Boursnell, Ningze Pang, Kristoffer Forslund, Goran Ceric, Jody Clements, Andreas Heger, Liisa Holm, Erik LL Sonnhammer, Sean R Eddy, Alex Bateman, Robert D Finn, None, The Pfam protein families database Nucleic Acids Research. ,vol. 30, pp. 276- 280 ,(2000) , 10.1093/NAR/GKR1065
Chris P Ponting, Nicholas J Dickens, Genome cartography through domain annotation. Genome Biology. ,vol. 2, pp. 1- 6 ,(2001) , 10.1186/GB-2001-2-7-COMMENT2006
Aron Marchler-Bauer, Anna R Panchenko, Benjamin A Shoemaker, Paul A Thiessen, Lewis Y Geer, Stephen H Bryant, CDD: a database of conserved domain alignments with links to domain three-dimensional structure Nucleic Acids Research. ,vol. 30, pp. 281- 283 ,(2002) , 10.1093/NAR/30.1.281
Zheng Zhang, Webb Miller, David J Lipman, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research. ,vol. 25, pp. 3389- 3402 ,(1997) , 10.1093/NAR/25.17.3389
Ivica Letunic, Leo Goodstadt, Nicholas J Dickens, Tobias Doerks, Joerg Schultz, Richard Mott, Francesca Ciccarelli, Richard R Copley, Chris P Ponting, Peer Bork, Recent improvements to the SMART domain-based sequence annotation resource Nucleic Acids Research. ,vol. 30, pp. 242- 244 ,(2002) , 10.1093/NAR/30.1.242
Rolf Apweiler, Terri K Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael DR Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov, None, The InterPro database, an integrated documentation resource for protein families, domains and functional sites Nucleic Acids Research. ,vol. 29, pp. 37- 40 ,(2001) , 10.1093/NAR/29.1.37