Next-generation sequencing: applications beyond genomes.
作者： Samuel Marguerat , Brian T. Wilhelm , Jürg Bähler
DOI: 10.1042/BST0361091
关键词: RNA-Seq 、 Snapshot (computer storage) 、 Metagenomics 、 Biology 、 Genetics 、 DNA sequencing 、 Genome 、 Massive parallel sequencing 、 Computational biology 、 Base sequence
摘要: … to sampling microbial diversities in a deep mine and in oceans [… Below, we will survey initial studies that analyse genome … Beyond conventional sampling of genome content, wide-…
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Robert A Edwards, Beltran Rodriguez-Brito, Linda Wegley, Matthew Haynes, Mya Breitbart, Dean M Peterson, Martin O Saar, Scott Alexander, E Calvin Alexander, Forest Rohwer, Using pyrosequencing to shed light on deep mine microbial ecology. BMC Genomics. ,vol. 7, pp. 57- 57 ,(2006) , 10.1186/1471-2164-7-57
Falk Warnecke, Peter Luginbühl, Natalia Ivanova, Majid Ghassemian, Toby H. Richardson, Justin T. Stege, Michelle Cayouette, Alice C. McHardy, Gordana Djordjevic, Nahla Aboushadi, Rotem Sorek, Susannah G. Tringe, Mircea Podar, Hector Garcia Martin, Victor Kunin, Daniel Dalevi, Julita Madejska, Edward Kirton, Darren Platt, Ernest Szeto, Asaf Salamov, Kerrie Barry, Natalia Mikhailova, Nikos C. Kyrpides, Eric G. Matson, Elizabeth A. Ottesen, Xinning Zhang, Myriam Hernández, Catalina Murillo, Luis G. Acosta, Isidore Rigoutsos, Giselle Tamayo, Brian D. Green, Cathy Chang, Edward M. Rubin, Eric J. Mathur, Dan E. Robertson, Philip Hugenholtz, Jared R. Leadbetter, Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature. ,vol. 450, pp. 560- 565 ,(2007) , 10.1038/NATURE06269
J. B. Kim, G. J. Porreca, L. Song, S. C. Greenway, J. M. Gorham, G. M. Church, C. E. Seidman, J. G. Seidman, Polony multiplex analysis of gene expression (PMAGE) in mouse hypertrophic cardiomyopathy. Science. ,vol. 316, pp. 1481- 1484 ,(2007) , 10.1126/SCIENCE.1137325
U. Nagalakshmi, Z. Wang, K. Waern, C. Shou, D. Raha, M. Gerstein, M. Snyder, The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing Science. ,vol. 320, pp. 1344- 1349 ,(2008) , 10.1126/SCIENCE.1158441
Jay Shendure, Gregory J Porreca, Nikos B Reppas, Xiaoxia Lin, John P McCutcheon, Abraham M Rosenbaum, Michael D Wang, Kun Zhang, Robi D Mitra, George M Church, Accurate Multiplex Polony Sequencing of an Evolved Bacterial Genome Science. ,vol. 309, pp. 1728- 1732 ,(2005) , 10.1126/SCIENCE.1117389
Florent E Angly, Ben Felts, Mya Breitbart, Peter Salamon, Robert A Edwards, Craig Carlson, Amy M Chan, Matthew Haynes, Scott Kelley, Hong Liu, Joseph M Mahaffy, Jennifer E Mueller, Jim Nulton, Robert Olson, Rachel Parsons, Steve Rayhawk, Curtis A Suttle, Forest Rohwer, The marine viromes of four oceanic regions PLOS Biology. ,vol. 4, pp. 2121- 2131 ,(2006) , 10.1371/JOURNAL.PBIO.0040368
Barbara Wold, Richard M Myers, Sequence census methods for functional genomics Nature Methods. ,vol. 5, pp. 19- 21 ,(2008) , 10.1038/NMETH1157
LaDeana W Hillier, Gabor T Marth, Aaron R Quinlan, David Dooling, Ginger Fewell, Derek Barnett, Paul Fox, Jarret I Glasscock, Matthew Hickenbotham, Weichun Huang, Vincent J Magrini, Ryan J Richt, Sacha N Sander, Donald A Stewart, Michael Stromberg, Eric F Tsung, Todd Wylie, Tim Schedl, Richard K Wilson, Elaine R Mardis, Whole-genome sequencing and variant discovery in C. elegans. Nature Methods. ,vol. 5, pp. 183- 188 ,(2008) , 10.1038/NMETH.1179
A. L. Toth, K. Varala, T. C. Newman, F. E. Miguez, S. K. Hutchison, D. A. Willoughby, J. F. Simons, M. Egholm, J. H. Hunt, M. E. Hudson, G. E. Robinson, Wasp gene expression supports an evolutionary link between maternal behavior and eusociality. Science. ,vol. 318, pp. 441- 444 ,(2007) , 10.1126/SCIENCE.1146647
Stephan C Schuster, Next-generation sequencing transforms today's biology. Nature Methods. ,vol. 5, pp. 16- 18 ,(2008) , 10.1038/NMETH1156