Mutation screening of PALB2 in clinically ascertained families from the Breast Cancer Family Registry.

作者: Tú Nguyen-Dumont , Fleur Hammet , Maryam Mahmoodi , Helen Tsimiklis , Zhi L Teo

DOI: 10.1007/S10549-014-3260-8

关键词: CancerPALB2Frameshift mutationBioinformaticsBiologyBreast Cancer GeneticsMassive parallel sequencingBreast cancerNonsense mutationMissense mutation

摘要: Loss-of-function mutations in PALB2 are associated with an increased risk of breast cancer, recent data showing that female cancer risks for mutation carriers comparable magnitude to those BRCA2 carriers. This study applied targeted massively parallel sequencing characterize the spectrum probands attending genetics clinics USA. The coding regions and proximal intron–exon junctions were screened not known carry a BRCA1 or BCRA2 from 1,250 families enrolled through familial by Breast Cancer Family Registry. Mutation screening was performed using Hi-Plex, amplicon-based platform. Screening successful 1,240/1,250 identified nine women protein-truncating (three nonsense five frameshift mutations). Four 33 missense variants predicted be deleterious protein function silico analysis two different programs. Analysis tumors truncating revealed majority high histological grade, invasive ductal carcinomas. Young onset apparent most families, 19 cancers under 50 years age, including eight age 40 years. Our demonstrate utility Hi-Plex context high-throughput testing rare genetic provide additional timely information about nature prevalence mutations, enhance assessment management at clinical services.

参考文章(29)
Tú Nguyen-Dumont, Bernard J. Pope, Fleur Hammet, Melissa C. Southey, Daniel J. Park, A high-plex PCR approach for massively parallel sequencing. BioTechniques. ,vol. 55, pp. 69- 74 ,(2013) , 10.2144/000114052
Ivan Adzhubei, Daniel M. Jordan, Shamil R. Sunyaev, Predicting Functional Effect of Human Missense Mutations Using PolyPhen-2 Current protocols in human genetics. ,vol. 76, ,(2013) , 10.1002/0471142905.HG0720S76
Hannele Erkko, Bing Xia, Jenni Nikkilä, Johanna Schleutker, Kirsi Syrjäkoski, Arto Mannermaa, Anne Kallioniemi, Katri Pylkäs, Sanna-Maria Karppinen, Katrin Rapakko, Alexander Miron, Qing Sheng, Guilan Li, Henna Mattila, Daphne W Bell, Daniel A Haber, Mervi Grip, Mervi Reiman, Arja Jukkola-Vuorinen, Aki Mustonen, Juha Kere, Lauri A Aaltonen, Veli-Matti Kosma, Vesa Kataja, Ylermi Soini, Ronny I Drapkin, David M Livingston, Robert Winqvist, None, A recurrent mutation in PALB2 in Finnish cancer families Nature. ,vol. 446, pp. 316- 319 ,(2007) , 10.1038/NATURE05609
Agnieszka Dansonka-Mieszkowska, Anna Kluska, Joanna Moes, Michalina Dabrowska, Dorota Nowakowska, Anna Niwinska, Pawel Derlatka, Krzysztof Cendrowski, Jolanta Kupryjanczyk, A novel germline PALB2 deletion in Polish breast and ovarian cancer patients BMC Medical Genetics. ,vol. 11, pp. 20- 20 ,(2010) , 10.1186/1471-2350-11-20
Brigitte Strahm, David Malkin, Hereditary cancer predisposition in children: Genetic basis and clinical implications International Journal of Cancer. ,vol. 119, pp. 2001- 2006 ,(2006) , 10.1002/IJC.21962
Hui-Chen Wu, Lissette Delgado-Cruzata, Nicola Machella, Qiao Wang, Regina M. Santella, Mary Beth Terry, DNA double-strand break repair genotype and phenotype and breast cancer risk within sisters from the New York site of the Breast Cancer Family Registry (BCFR) Cancer Causes & Control. ,vol. 24, pp. 2157- 2168 ,(2013) , 10.1007/S10552-013-0292-Z
K. Wang, M. Li, H. Hakonarson, ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data Nucleic Acids Research. ,vol. 38, ,(2010) , 10.1093/NAR/GKQ603
J-Y Park, T R Singh, N Nassar, F Zhang, M Freund, H Hanenberg, A R Meetei, P R Andreassen, Breast cancer-associated missense mutants of the PALB2 WD40 domain, which directly binds RAD51C, RAD51 and BRCA2, disrupt DNA repair Oncogene. ,vol. 33, pp. 4803- 4812 ,(2014) , 10.1038/ONC.2013.421
Michael D. Taylor, Ling Liu, Corey Raffel, Chi-chung Hui, Todd G. Mainprize, Xiaoyun Zhang, Ron Agatep, Sharon Chiappa, Luzhang Gao, Anja Lowrance, Aihau Hao, Alisa M. Goldstein, Theodora Stavrou, Stephen W. Scherer, Wieslaw T. Dura, Brandon Wainwright, Jeremy A. Squire, James T. Rutka, David Hogg, Mutations in SUFU predispose to medulloblastoma Nature Genetics. ,vol. 31, pp. 306- 310 ,(2002) , 10.1038/NG916
Tú Nguyen-Dumont, Zhi L Teo, Bernard J Pope, Fleur Hammet, Maryam Mahmoodi, Helen Tsimiklis, Nelly Sabbaghian, Marc Tischkowitz, William D Foulkes, Kathleen Cuningham Foundation Consortium for research into Familial Breast cancer (kConFab) heather. thorne@ petermac. org, Graham G Giles, John L Hopper, Australian Breast Cancer Family Registry burgiomr@ gmail. com, Melissa C Southey, Daniel J Park, None, Hi-Plex for high-throughput mutation screening: application to the breast cancer susceptibility gene PALB2 BMC Medical Genomics. ,vol. 6, pp. 48- 48 ,(2013) , 10.1186/1755-8794-6-48