Expression array annotation using the BioMediator biological data integration system and the BioConductor analytic platform.
作者： Peter Tarczy-Hornoch , Ron Shaker , Peter Mork , Loren Donelson , Hao Mei
DOI:
关键词: Biological data 、 Data mining 、 Interface (Java) 、 Computer science 、 Component (UML) 、 Expression (mathematics) 、 Gene expression profiling 、 Annotation 、 Bioconductor
摘要: This paper presents the implementation of a model for expression array annotation (EAA) using BioMediator biological data integration system along with BioConductor, an analytic tools platform. The presented addresses need sources identified during BioConductor’s development. Annotation provides us well-curated genomic background knowledge analysis and interpretation. requests are constructed posted to query interface EAA package (the implemented as component BioConductor). software enumerates all possible paths queries. These then transformed PQL queries processed by BioMediator. entities returned from answer request.
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