Predominant structural configuration of natural antibody repertoires enables potent antibody responses against protein antigens.

作者: Hong-Sen Chen , Shin-Chen Hou , Jhih-Wei Jian , King-Siang Goh , San-Tai Shen

DOI: 10.1038/SREP12411

关键词: AntigenBiologyHumoral immunityComputational biologyBinding siteSynthetic antibodyImmunityAntibody RepertoireImmunogenAntibodyVirology

摘要: Humoral immunity against diverse pathogens is rapidly elicited from natural antibody repertoires of limited complexity. But the organizing principles underlying that facilitate this are not well-understood. We used HER2 as a model immunogen and reverse-engineered murine response through constructing an artificial library encoded with rudimentary sequence structural characteristics learned high throughput sequencing variable domains. Antibodies selected in vitro phage-displayed synthetic bound to affinity specificities, which reproduced specificities responses. conclude shaped allow functional antibodies be efficiently, within complexity limit individual repertoire, bind protein antigens specificity affinity. Phage-displayed libraries, conjunction high-throughput sequencing, can thus designed replicate responses generate novel antigens.

参考文章(44)
I. M. Tomlinson, J. P. Cox, E. Gherardi, A. M. Lesk, C. Chothia, The structural repertoire of the human V kappa domain. The EMBO Journal. ,vol. 14, pp. 4628- 4638 ,(1995) , 10.1002/J.1460-2075.1995.TB00142.X
Gopalan Raghunathan, Jason Smart, Joseph Williams, Juan Carlos Almagro, Antigen-binding site anatomy and somatic mutations in antibodies that recognize different types of antigens. Journal of Molecular Recognition. ,vol. 25, pp. 103- 113 ,(2012) , 10.1002/JMR.2158
Sai T Reddy, Xin Ge, Aleksandr E Miklos, Randall A Hughes, Seung Hyun Kang, Kam Hon Hoi, Constantine Chrysostomou, Scott P Hunicke-Smith, Brent L Iverson, Philip W Tucker, Andrew D Ellington, George Georgiou, Monoclonal antibodies isolated without screening by analyzing the variable-gene repertoire of plasma cells Nature Biotechnology. ,vol. 28, pp. 965- 969 ,(2010) , 10.1038/NBT.1673
Andrew C.R. Martin, Janet M. Thornton, Structural Families in Loops of Homologous Proteins: Automatic Classification, Modelling and Application to Antibodies Journal of Molecular Biology. ,vol. 263, pp. 800- 815 ,(1996) , 10.1006/JMBI.1996.0617
Jessica A Finn, James E Crowe, Impact of new sequencing technologies on studies of the human B cell repertoire. Current Opinion in Immunology. ,vol. 25, pp. 613- 618 ,(2013) , 10.1016/J.COI.2013.09.010
Hung-Ju Chang, Jhih-Wei Jian, Hung-Ju Hsu, Yu-Ching Lee, Hong-Sen Chen, Jhong-Jhe You, Shin-Chen Hou, Chih-Yun Shao, Yen-Ju Chen, Kuo-Ping Chiu, Hung-Pin Peng, Kuo Hao Lee, An-Suei Yang, None, Loop-sequence features and stability determinants in antibody variable domains by high-throughput experiments. Structure. ,vol. 22, pp. 9- 21 ,(2014) , 10.1016/J.STR.2013.10.005
George Georgiou, Gregory C Ippolito, John Beausang, Christian E Busse, Hedda Wardemann, Stephen R Quake, The promise and challenge of high-throughput sequencing of the antibody repertoire. Nature Biotechnology. ,vol. 32, pp. 158- 168 ,(2014) , 10.1038/NBT.2782
S. Miersch, S.S. Sidhu, Synthetic antibodies: concepts, potential and practical considerations. Methods. ,vol. 57, pp. 486- 498 ,(2012) , 10.1016/J.YMETH.2012.06.012
Hung-Pin Peng, Kuo Hao Lee, Jhih-Wei Jian, An-Suei Yang, Origins of specificity and affinity in antibody–protein interactions Proceedings of the National Academy of Sciences of the United States of America. ,vol. 111, pp. 201401131- ,(2014) , 10.1073/PNAS.1401131111
Thomas Tiller, Ingrid Schuster, Dorothée Deppe, Katja Siegers, Ralf Strohner, Tanja Herrmann, Marion Berenguer, Dominique Poujol, Jennifer Stehle, Yvonne Stark, Martin Heßling, Daniela Daubert, Karin Felderer, Stefan Kaden, Johanna Kölln, Markus Enzelberger, Stefanie Urlinger, A fully synthetic human Fab antibody library based on fixed VH/VL framework pairings with favorable biophysical properties mAbs. ,vol. 5, pp. 445- 470 ,(2013) , 10.4161/MABS.24218